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Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

This protein is located near the guanosine triphosphatase center of the 50S subunit.

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • ribosomal large subunit assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciEcoCyc:EG10888-MONOMER
MetaCyc:EG10888-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30UniRule annotation
Alternative name(s):
Large ribosomal subunit protein uL301 Publication
Gene namesi
Name:rpmDUniRule annotation
Ordered Locus Names:b3302, JW3264
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10888 rpmD

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: CAFA

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001045902 – 5950S ribosomal protein L30Add BLAST58

Proteomic databases

EPDiP0AG51
PaxDbiP0AG51
PRIDEiP0AG51

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.9 Publications

Protein-protein interaction databases

DIPiDIP-35970N
IntActiP0AG51, 3 interactors
STRINGi316385.ECDH10B_3477

Structurei

Secondary structure

159
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 9Combined sources6
Helixi18 – 27Combined sources10
Beta strandi35 – 39Combined sources5
Helixi42 – 51Combined sources10
Turni52 – 54Combined sources3
Beta strandi55 – 58Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1ML5electron microscopy14.00x1-59[»]
2J28electron microscopy8.00Y2-59[»]
2RDOelectron microscopy9.10Y2-59[»]
3BBXelectron microscopy10.00Y2-59[»]
3J5Lelectron microscopy6.60Z2-59[»]
3J7Zelectron microscopy3.90Z1-59[»]
3J8Gelectron microscopy5.0021-59[»]
3J9Yelectron microscopy3.90Z1-59[»]
3J9Zelectron microscopy3.60LY2-59[»]
3JA1electron microscopy3.60L12-59[»]
3JBUelectron microscopy3.6421-59[»]
3JBVelectron microscopy3.3221-59[»]
3JCDelectron microscopy3.70Z1-59[»]
3JCEelectron microscopy3.20Z1-59[»]
3JCJelectron microscopy3.70Y1-59[»]
3JCNelectron microscopy4.60Z1-59[»]
4CSUelectron microscopy5.5022-59[»]
4U1UX-ray2.95BZ/DZ2-59[»]
4U1VX-ray3.00BZ/DZ2-59[»]
4U20X-ray2.90BZ/DZ2-59[»]
4U24X-ray2.90BZ/DZ2-59[»]
4U25X-ray2.90BZ/DZ2-59[»]
4U26X-ray2.80BZ/DZ2-59[»]
4U27X-ray2.80BZ/DZ2-59[»]
4UY8electron microscopy3.80Z2-59[»]
4V47electron microscopy12.30AX2-59[»]
4V48electron microscopy11.50AX2-59[»]
4V4HX-ray3.46BY/DY1-59[»]
4V4QX-ray3.46BY/DY2-59[»]
4V4Velectron microscopy15.00BX4-59[»]
4V4Welectron microscopy15.00BX4-59[»]
4V50X-ray3.22BZ/DZ2-59[»]
4V52X-ray3.21BY/DY2-59[»]
4V53X-ray3.54BY/DY2-59[»]
4V54X-ray3.30BY/DY2-59[»]
4V55X-ray4.00BY/DY2-59[»]
4V56X-ray3.93BY/DY2-59[»]
4V57X-ray3.50BY/DY2-59[»]
4V5BX-ray3.74AY/CY2-59[»]
4V5Helectron microscopy5.80B22-59[»]
4V5YX-ray4.45BY/DY2-59[»]
4V64X-ray3.50BY/DY2-59[»]
4V65electron microscopy9.00BR1-59[»]
4V66electron microscopy9.00BR1-59[»]
4V69electron microscopy6.70BZ2-59[»]
4V6CX-ray3.19BZ/DZ1-59[»]
4V6DX-ray3.81BZ/DZ1-59[»]
4V6EX-ray3.71BZ/DZ1-59[»]
4V6Kelectron microscopy8.25Aa1-59[»]
4V6Lelectron microscopy13.20Ba1-59[»]
4V6Melectron microscopy7.10BZ2-59[»]
4V6Nelectron microscopy12.10A12-59[»]
4V6Oelectron microscopy14.70B12-59[»]
4V6Pelectron microscopy13.50B12-59[»]
4V6Qelectron microscopy11.50B12-59[»]
4V6Relectron microscopy11.50B12-59[»]
4V6Selectron microscopy13.10A12-59[»]
4V6Telectron microscopy8.30BZ2-59[»]
4V6Velectron microscopy9.80B32-59[»]
4V6Yelectron microscopy12.00BZ1-59[»]
4V6Zelectron microscopy12.00BZ1-59[»]
4V70electron microscopy17.00BZ1-59[»]
4V71electron microscopy20.00BZ1-59[»]
4V72electron microscopy13.00BZ1-59[»]
4V73electron microscopy15.00BZ1-59[»]
4V74electron microscopy17.00BZ1-59[»]
4V75electron microscopy12.00BZ1-59[»]
4V76electron microscopy17.00BZ1-59[»]
4V77electron microscopy17.00BZ1-59[»]
4V78electron microscopy20.00BZ1-59[»]
4V79electron microscopy15.00BZ1-59[»]
4V7Aelectron microscopy9.00BZ1-59[»]
4V7Belectron microscopy6.80BZ1-59[»]
4V7Celectron microscopy7.60B22-59[»]
4V7Delectron microscopy7.60A32-59[»]
4V7Ielectron microscopy9.60AZ1-59[»]
4V7SX-ray3.25BZ/DZ2-59[»]
4V7TX-ray3.19BZ/DZ2-59[»]
4V7UX-ray3.10BZ/DZ2-59[»]
4V7VX-ray3.29BZ/DZ2-59[»]
4V85X-ray3.2031-59[»]
4V89X-ray3.70B31-59[»]
4V9CX-ray3.30BZ/DZ1-59[»]
4V9DX-ray3.00CZ/DZ2-59[»]
4V9OX-ray2.90AZ/CZ/EZ/GZ1-59[»]
4V9PX-ray2.90AZ/CZ/EZ/GZ1-59[»]
4WF1X-ray3.09BZ/DZ2-59[»]
4WOIX-ray3.00BZ/CZ1-59[»]
4WWWX-ray3.10RZ/YZ2-59[»]
4YBBX-ray2.10C0/D02-59[»]
5ADYelectron microscopy4.50Z1-59[»]
5AFIelectron microscopy2.90Z1-59[»]
5AKAelectron microscopy5.70Y2-59[»]
5GADelectron microscopy3.70a1-59[»]
5GAEelectron microscopy3.33a1-59[»]
5GAFelectron microscopy4.30a2-59[»]
5GAGelectron microscopy3.80a1-59[»]
5GAHelectron microscopy3.80a1-59[»]
5H5Uelectron microscopy3.00a2-59[»]
5IQRelectron microscopy3.00Z1-59[»]
5IT8X-ray3.12C0/D02-59[»]
5J5BX-ray2.80C0/D02-59[»]
5J7LX-ray3.00C0/D02-59[»]
5J88X-ray3.32C0/D02-59[»]
5J8AX-ray3.10C0/D02-59[»]
5J91X-ray2.96C0/D02-59[»]
5JC9X-ray3.03C0/D02-59[»]
5JTEelectron microscopy3.60BZ1-59[»]
5JU8electron microscopy3.60BZ1-59[»]
5KCRelectron microscopy3.60131-59[»]
5KCSelectron microscopy3.90131-59[»]
5KPSelectron microscopy3.90Z1-59[»]
5KPVelectron microscopy4.10Y1-59[»]
5KPWelectron microscopy3.90Y1-59[»]
5KPXelectron microscopy3.90Y1-59[»]
5L3Pelectron microscopy3.7031-59[»]
5LZAelectron microscopy3.60Z2-59[»]
5LZBelectron microscopy5.30Z2-59[»]
5LZCelectron microscopy4.80Z2-59[»]
5LZDelectron microscopy3.40Z2-59[»]
5LZEelectron microscopy3.50Z2-59[»]
5LZFelectron microscopy4.60Z2-59[»]
5MDVelectron microscopy2.97Z1-59[»]
5MDWelectron microscopy3.06Z1-59[»]
5MDYelectron microscopy3.35Z1-59[»]
5MDZelectron microscopy3.10Z1-59[»]
5MGPelectron microscopy3.10Z2-59[»]
5NCOelectron microscopy4.80a2-59[»]
5NP6electron microscopy3.60x2-59[»]
5NWYelectron microscopy2.93m1-59[»]
5O2Relectron microscopy3.40Z2-59[»]
5U4Ielectron microscopy3.5001-59[»]
5U9Felectron microscopy3.20281-59[»]
5U9Gelectron microscopy3.20281-59[»]
5UYKelectron microscopy3.90282-59[»]
5UYLelectron microscopy3.60282-59[»]
5UYMelectron microscopy3.20282-59[»]
5UYNelectron microscopy4.00282-59[»]
5UYPelectron microscopy3.90282-59[»]
5UYQelectron microscopy3.80282-59[»]
6BU8electron microscopy3.50282-59[»]
6C4Ielectron microscopy3.2401-59[»]
6ENFelectron microscopy3.20Z2-59[»]
6ENJelectron microscopy3.70Z2-59[»]
6ENUelectron microscopy3.10Z2-59[»]
ProteinModelPortaliP0AG51
SMRiP0AG51
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AG51

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL30 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VPB Bacteria
COG1841 LUCA
HOGENOMiHOG000039916
InParanoidiP0AG51
KOiK02907
OMAiIGGKQNQ
PhylomeDBiP0AG51

Family and domain databases

CDDicd01658 Ribosomal_L30, 1 hit
Gene3Di3.30.1390.20, 1 hit
HAMAPiMF_01371_B Ribosomal_L30_B, 1 hit
InterProiView protein in InterPro
IPR036919 L30_ferredoxin-like_sf
IPR005996 Ribosomal_L30_bac-type
IPR018038 Ribosomal_L30_CS
IPR016082 Ribosomal_L30_ferredoxin-like
PANTHERiPTHR15892 PTHR15892, 1 hit
PfamiView protein in Pfam
PF00327 Ribosomal_L30, 1 hit
PIRSFiPIRSF002211 Ribosomal_L30_bac-type, 1 hit
SUPFAMiSSF55129 SSF55129, 1 hit
TIGRFAMsiTIGR01308 rpmD_bact, 1 hit
PROSITEiView protein in PROSITE
PS00634 RIBOSOMAL_L30, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AG51-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKTIKITQT RSAIGRLPKH KATLLGLGLR RIGHTVERED TPAIRGMINA

VSFMVKVEE
Length:59
Mass (Da):6,542
Last modified:January 23, 2007 - v2
Checksum:i08F427BBB6F820A4
GO

Mass spectrometryi

Molecular mass is 6410.3 Da from positions 2 - 59. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X01563 Genomic DNA Translation: CAA25723.1
U18997 Genomic DNA Translation: AAA58099.1
U00096 Genomic DNA Translation: AAC76327.1
AP009048 Genomic DNA Translation: BAE77989.1
PIRiA65123 R5EC30
RefSeqiNP_417761.1, NC_000913.3
WP_001140433.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76327; AAC76327; b3302
BAE77989; BAE77989; BAE77989
GeneIDi947797
KEGGiecj:JW3264
eco:b3302
PATRICifig|1411691.4.peg.3429

Similar proteinsi

Entry informationi

Entry nameiRL30_ECOLI
AccessioniPrimary (citable) accession number: P0AG51
Secondary accession number(s): P02430, Q2M6W7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: April 25, 2018
This is version 123 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

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