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P0AG51

- RL30_ECOLI

UniProt

P0AG51 - RL30_ECOLI

Protein

50S ribosomal protein L30

Gene

rpmD

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    BioCyciEcoCyc:EG10888-MONOMER.
    ECOL316407:JW3264-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L30UniRule annotation
    Gene namesi
    Name:rpmDUniRule annotation
    Ordered Locus Names:b3302, JW3264
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG10888. rpmD.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic large ribosomal subunit Source: EcoCyc

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 595850S ribosomal protein L30PRO_0000104590Add
    BLAST

    Proteomic databases

    PaxDbiP0AG51.
    PRIDEiP0AG51.

    Expressioni

    Gene expression databases

    GenevestigatoriP0AG51.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.

    Protein-protein interaction databases

    DIPiDIP-35970N.
    IntActiP0AG51. 3 interactions.
    STRINGi511145.b3302.

    Structurei

    Secondary structure

    1
    59
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi5 – 84
    Beta strandi13 – 164
    Helixi18 – 2710
    Beta strandi31 – 333
    Beta strandi36 – 383
    Helixi42 – 509
    Helixi52 – 543
    Beta strandi56 – 583

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1ML5electron microscopy14.00x1-59[»]
    1P85electron microscopy12.30X2-59[»]
    1P86electron microscopy11.50X2-59[»]
    1VS6X-ray3.46Y1-59[»]
    1VS8X-ray3.46Y1-59[»]
    1VT2X-ray3.30Z1-59[»]
    2AW4X-ray3.46Y2-59[»]
    2AWBX-ray3.46Y2-59[»]
    2GYAelectron microscopy15.00X4-59[»]
    2GYCelectron microscopy15.00X4-59[»]
    2I2TX-ray3.22Z2-59[»]
    2I2VX-ray3.22Z2-59[»]
    2J28electron microscopy8.00Y2-59[»]
    2QAMX-ray3.21Y2-59[»]
    2QAOX-ray3.21Y2-59[»]
    2QBAX-ray3.54Y2-59[»]
    2QBCX-ray3.54Y2-59[»]
    2QBEX-ray3.30Y2-59[»]
    2QBGX-ray3.30Y2-59[»]
    2QBIX-ray4.00Y2-59[»]
    2QBKX-ray4.00Y2-59[»]
    2QOVX-ray3.93Y2-59[»]
    2QOXX-ray3.93Y2-59[»]
    2QOZX-ray3.50Y2-59[»]
    2QP1X-ray3.50Y2-59[»]
    2RDOelectron microscopy9.10Y2-59[»]
    2WWQelectron microscopy5.8022-59[»]
    2Z4LX-ray4.45Y2-59[»]
    2Z4NX-ray4.45Y2-59[»]
    3BBXelectron microscopy10.00Y2-59[»]
    3E1Belectron microscopy-R1-59[»]
    3E1Delectron microscopy-R1-59[»]
    3FIKelectron microscopy6.70Z2-59[»]
    3I1NX-ray3.19Z1-59[»]
    3I1PX-ray3.19Z1-59[»]
    3I1RX-ray3.81Z1-59[»]
    3I1TX-ray3.81Z1-59[»]
    3I20X-ray3.71Z1-59[»]
    3I22X-ray3.71Z1-59[»]
    3IZTelectron microscopy-a1-59[»]
    3IZUelectron microscopy-a1-59[»]
    3J01electron microscopy-Z2-59[»]
    3J0Telectron microscopy12.1012-59[»]
    3J0Welectron microscopy14.7012-59[»]
    3J0Yelectron microscopy13.5012-59[»]
    3J11electron microscopy13.1012-59[»]
    3J12electron microscopy11.5012-59[»]
    3J14electron microscopy11.5012-59[»]
    3J19electron microscopy8.30Z2-59[»]
    3J37electron microscopy9.8032-59[»]
    3J4Xelectron microscopy12.00Z1-59[»]
    3J50electron microscopy20.00Z1-59[»]
    3J51electron microscopy17.00Z1-59[»]
    3J52electron microscopy12.00Z1-59[»]
    3J54electron microscopy13.00Z1-59[»]
    3J56electron microscopy15.00Z1-59[»]
    3J58electron microscopy17.00Z1-59[»]
    3J5Aelectron microscopy12.00Z1-59[»]
    3J5Celectron microscopy17.00Z1-59[»]
    3J5Eelectron microscopy17.00Z1-59[»]
    3J5Gelectron microscopy20.00Z1-59[»]
    3J5Ielectron microscopy15.00Z1-59[»]
    3J5Kelectron microscopy9.00Z1-59[»]
    3J5Lelectron microscopy6.60Z2-59[»]
    3J5Oelectron microscopy6.80Z1-59[»]
    3J5Uelectron microscopy7.6022-59[»]
    3J5Welectron microscopy7.6032-59[»]
    3KCRelectron microscopy-Z1-59[»]
    3OASX-ray3.25Z2-59[»]
    3OATX-ray3.25Z2-59[»]
    3OFCX-ray3.19Z2-59[»]
    3OFDX-ray3.19Z2-59[»]
    3OFQX-ray3.10Z2-59[»]
    3OFRX-ray3.10Z2-59[»]
    3OFZX-ray3.29Z2-59[»]
    3OG0X-ray3.29Z2-59[»]
    3ORBX-ray3.30Z1-59[»]
    3R8SX-ray3.00Z2-59[»]
    3R8TX-ray3.00Z2-59[»]
    3SGFX-ray3.2031-59[»]
    3UOSX-ray3.7031-59[»]
    4CSUelectron microscopy5.5022-59[»]
    4GARX-ray3.30Z1-59[»]
    4GAUX-ray3.30Z1-59[»]
    4KIXX-ray2.90Z1-59[»]
    4KIZX-ray2.90Z1-59[»]
    4KJ1X-ray2.90Z1-59[»]
    4KJ3X-ray2.90Z1-59[»]
    4KJ5X-ray2.90Z1-59[»]
    4KJ7X-ray2.90Z1-59[»]
    4KJ9X-ray2.90Z1-59[»]
    4KJBX-ray2.90Z1-59[»]
    ProteinModelPortaliP0AG51.
    SMRiP0AG51. Positions 2-59.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP0AG51.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L30P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1841.
    HOGENOMiHOG000039916.
    KOiK02907.
    OMAiKVTQIRS.
    OrthoDBiEOG6BGP7P.
    PhylomeDBiP0AG51.

    Family and domain databases

    Gene3Di3.30.1390.20. 1 hit.
    HAMAPiMF_01371_B. Ribosomal_L30_B.
    InterProiIPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view]
    PfamiPF00327. Ribosomal_L30. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMiSSF55129. SSF55129. 1 hit.
    TIGRFAMsiTIGR01308. rpmD_bact. 1 hit.
    PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P0AG51-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKTIKITQT RSAIGRLPKH KATLLGLGLR RIGHTVERED TPAIRGMINA   50
    VSFMVKVEE 59
    Length:59
    Mass (Da):6,542
    Last modified:January 23, 2007 - v2
    Checksum:i08F427BBB6F820A4
    GO

    Mass spectrometryi

    Molecular mass is 6410.3 Da from positions 2 - 59. Determined by MALDI. 1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X01563 Genomic DNA. Translation: CAA25723.1.
    U18997 Genomic DNA. Translation: AAA58099.1.
    U00096 Genomic DNA. Translation: AAC76327.1.
    AP009048 Genomic DNA. Translation: BAE77989.1.
    PIRiA65123. R5EC30.
    RefSeqiNP_417761.1. NC_000913.3.
    YP_492130.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC76327; AAC76327; b3302.
    BAE77989; BAE77989; BAE77989.
    GeneIDi12934448.
    947797.
    KEGGiecj:Y75_p3874.
    eco:b3302.
    PATRICi32122036. VBIEscCol129921_3395.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X01563 Genomic DNA. Translation: CAA25723.1 .
    U18997 Genomic DNA. Translation: AAA58099.1 .
    U00096 Genomic DNA. Translation: AAC76327.1 .
    AP009048 Genomic DNA. Translation: BAE77989.1 .
    PIRi A65123. R5EC30.
    RefSeqi NP_417761.1. NC_000913.3.
    YP_492130.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1ML5 electron microscopy 14.00 x 1-59 [» ]
    1P85 electron microscopy 12.30 X 2-59 [» ]
    1P86 electron microscopy 11.50 X 2-59 [» ]
    1VS6 X-ray 3.46 Y 1-59 [» ]
    1VS8 X-ray 3.46 Y 1-59 [» ]
    1VT2 X-ray 3.30 Z 1-59 [» ]
    2AW4 X-ray 3.46 Y 2-59 [» ]
    2AWB X-ray 3.46 Y 2-59 [» ]
    2GYA electron microscopy 15.00 X 4-59 [» ]
    2GYC electron microscopy 15.00 X 4-59 [» ]
    2I2T X-ray 3.22 Z 2-59 [» ]
    2I2V X-ray 3.22 Z 2-59 [» ]
    2J28 electron microscopy 8.00 Y 2-59 [» ]
    2QAM X-ray 3.21 Y 2-59 [» ]
    2QAO X-ray 3.21 Y 2-59 [» ]
    2QBA X-ray 3.54 Y 2-59 [» ]
    2QBC X-ray 3.54 Y 2-59 [» ]
    2QBE X-ray 3.30 Y 2-59 [» ]
    2QBG X-ray 3.30 Y 2-59 [» ]
    2QBI X-ray 4.00 Y 2-59 [» ]
    2QBK X-ray 4.00 Y 2-59 [» ]
    2QOV X-ray 3.93 Y 2-59 [» ]
    2QOX X-ray 3.93 Y 2-59 [» ]
    2QOZ X-ray 3.50 Y 2-59 [» ]
    2QP1 X-ray 3.50 Y 2-59 [» ]
    2RDO electron microscopy 9.10 Y 2-59 [» ]
    2WWQ electron microscopy 5.80 2 2-59 [» ]
    2Z4L X-ray 4.45 Y 2-59 [» ]
    2Z4N X-ray 4.45 Y 2-59 [» ]
    3BBX electron microscopy 10.00 Y 2-59 [» ]
    3E1B electron microscopy - R 1-59 [» ]
    3E1D electron microscopy - R 1-59 [» ]
    3FIK electron microscopy 6.70 Z 2-59 [» ]
    3I1N X-ray 3.19 Z 1-59 [» ]
    3I1P X-ray 3.19 Z 1-59 [» ]
    3I1R X-ray 3.81 Z 1-59 [» ]
    3I1T X-ray 3.81 Z 1-59 [» ]
    3I20 X-ray 3.71 Z 1-59 [» ]
    3I22 X-ray 3.71 Z 1-59 [» ]
    3IZT electron microscopy - a 1-59 [» ]
    3IZU electron microscopy - a 1-59 [» ]
    3J01 electron microscopy - Z 2-59 [» ]
    3J0T electron microscopy 12.10 1 2-59 [» ]
    3J0W electron microscopy 14.70 1 2-59 [» ]
    3J0Y electron microscopy 13.50 1 2-59 [» ]
    3J11 electron microscopy 13.10 1 2-59 [» ]
    3J12 electron microscopy 11.50 1 2-59 [» ]
    3J14 electron microscopy 11.50 1 2-59 [» ]
    3J19 electron microscopy 8.30 Z 2-59 [» ]
    3J37 electron microscopy 9.80 3 2-59 [» ]
    3J4X electron microscopy 12.00 Z 1-59 [» ]
    3J50 electron microscopy 20.00 Z 1-59 [» ]
    3J51 electron microscopy 17.00 Z 1-59 [» ]
    3J52 electron microscopy 12.00 Z 1-59 [» ]
    3J54 electron microscopy 13.00 Z 1-59 [» ]
    3J56 electron microscopy 15.00 Z 1-59 [» ]
    3J58 electron microscopy 17.00 Z 1-59 [» ]
    3J5A electron microscopy 12.00 Z 1-59 [» ]
    3J5C electron microscopy 17.00 Z 1-59 [» ]
    3J5E electron microscopy 17.00 Z 1-59 [» ]
    3J5G electron microscopy 20.00 Z 1-59 [» ]
    3J5I electron microscopy 15.00 Z 1-59 [» ]
    3J5K electron microscopy 9.00 Z 1-59 [» ]
    3J5L electron microscopy 6.60 Z 2-59 [» ]
    3J5O electron microscopy 6.80 Z 1-59 [» ]
    3J5U electron microscopy 7.60 2 2-59 [» ]
    3J5W electron microscopy 7.60 3 2-59 [» ]
    3KCR electron microscopy - Z 1-59 [» ]
    3OAS X-ray 3.25 Z 2-59 [» ]
    3OAT X-ray 3.25 Z 2-59 [» ]
    3OFC X-ray 3.19 Z 2-59 [» ]
    3OFD X-ray 3.19 Z 2-59 [» ]
    3OFQ X-ray 3.10 Z 2-59 [» ]
    3OFR X-ray 3.10 Z 2-59 [» ]
    3OFZ X-ray 3.29 Z 2-59 [» ]
    3OG0 X-ray 3.29 Z 2-59 [» ]
    3ORB X-ray 3.30 Z 1-59 [» ]
    3R8S X-ray 3.00 Z 2-59 [» ]
    3R8T X-ray 3.00 Z 2-59 [» ]
    3SGF X-ray 3.20 3 1-59 [» ]
    3UOS X-ray 3.70 3 1-59 [» ]
    4CSU electron microscopy 5.50 2 2-59 [» ]
    4GAR X-ray 3.30 Z 1-59 [» ]
    4GAU X-ray 3.30 Z 1-59 [» ]
    4KIX X-ray 2.90 Z 1-59 [» ]
    4KIZ X-ray 2.90 Z 1-59 [» ]
    4KJ1 X-ray 2.90 Z 1-59 [» ]
    4KJ3 X-ray 2.90 Z 1-59 [» ]
    4KJ5 X-ray 2.90 Z 1-59 [» ]
    4KJ7 X-ray 2.90 Z 1-59 [» ]
    4KJ9 X-ray 2.90 Z 1-59 [» ]
    4KJB X-ray 2.90 Z 1-59 [» ]
    ProteinModelPortali P0AG51.
    SMRi P0AG51. Positions 2-59.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-35970N.
    IntActi P0AG51. 3 interactions.
    STRINGi 511145.b3302.

    Chemistry

    ChEMBLi CHEMBL2363135.

    Proteomic databases

    PaxDbi P0AG51.
    PRIDEi P0AG51.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC76327 ; AAC76327 ; b3302 .
    BAE77989 ; BAE77989 ; BAE77989 .
    GeneIDi 12934448.
    947797.
    KEGGi ecj:Y75_p3874.
    eco:b3302.
    PATRICi 32122036. VBIEscCol129921_3395.

    Organism-specific databases

    EchoBASEi EB0881.
    EcoGenei EG10888. rpmD.

    Phylogenomic databases

    eggNOGi COG1841.
    HOGENOMi HOG000039916.
    KOi K02907.
    OMAi KVTQIRS.
    OrthoDBi EOG6BGP7P.
    PhylomeDBi P0AG51.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG10888-MONOMER.
    ECOL316407:JW3264-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0AG51.
    PROi P0AG51.

    Gene expression databases

    Genevestigatori P0AG51.

    Family and domain databases

    Gene3Di 3.30.1390.20. 1 hit.
    HAMAPi MF_01371_B. Ribosomal_L30_B.
    InterProi IPR005996. Ribosomal_L30_bac-type.
    IPR018038. Ribosomal_L30_CS.
    IPR016082. Ribosomal_L30_ferredoxin-like.
    [Graphical view ]
    Pfami PF00327. Ribosomal_L30. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002211. Ribosomal_L30_bac-type. 1 hit.
    SUPFAMi SSF55129. SSF55129. 1 hit.
    TIGRFAMsi TIGR01308. rpmD_bact. 1 hit.
    PROSITEi PS00634. RIBOSOMAL_L30. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene."
      Cerretti D.P., Dean D., Davis G.R., Bedwell D.M., Nomura M.
      Nucleic Acids Res. 11:2599-2616(1983) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    4. "The primary structure of protein L30 from Escherichia coli ribosomes."
      Ritter E., Wittmann-Liebold B.
      FEBS Lett. 60:153-155(1975) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-59.
      Strain: K.
    5. "Escherichia coli proteome analysis using the gene-protein database."
      VanBogelen R.A., Abshire K.Z., Moldover B., Olson E.R., Neidhardt F.C.
      Electrophoresis 18:1243-1251(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY 2D-GEL.
    6. "Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
      Arnold R.J., Reilly J.P.
      Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: MASS SPECTROMETRY.
      Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
    7. "Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
      Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
      Cell 113:789-801(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
      Strain: MRE-600.
    8. Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
      Strain: MRE-600.

    Entry informationi

    Entry nameiRL30_ECOLI
    AccessioniPrimary (citable) accession number: P0AG51
    Secondary accession number(s): P02430, Q2M6W7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 21, 1986
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 91 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    This protein is located near the guanosine triphosphatase center of the 50S subunit.

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. Ribosomal proteins
      Ribosomal proteins families and list of entries
    4. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3