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P0AG44 (RL17_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L17
Gene names
Name:rplQ
Ordered Locus Names:b3294, JW3256
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length127 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Requires L15 for assembly into the 50S subunit. HAMAP-Rule MF_01368

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L32. Ref.6

Sequence similarities

Belongs to the ribosomal protein L17P family.

Mass spectrometry

Molecular mass is 14364.7 Da from positions 1 - 127. Determined by MALDI. Ref.9

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12712750S ribosomal protein L17 HAMAP-Rule MF_01368
PRO_0000175524

Secondary structure

...................... 127
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P0AG44 [UniParc].

Last modified July 21, 1986. Version 1.
Checksum: D96DF17C07013A11

FASTA12714,365
        10         20         30         40         50         60 
MRHRKSGRQL NRNSSHRQAM FRNMAGSLVR HEIIKTTLPK AKELRRVVEP LITLAKTDSV 

        70         80         90        100        110        120 
ANRRLAFART RDNEIVAKLF NELGPRFASR AGGYTRILKC GFRAGDNAPM AYIELVDRSE 


KAEAAAE 

« Hide

References

« Hide 'large scale' references
[1]"The primary structure of protein L17 from the Escherichia coli ribosome."
Rombauts W., Feytons V., Wittmann-Liebold B.
FEBS Lett. 149:320-327(1982)
Cited for: PROTEIN SEQUENCE.
[2]"Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?"
Meek D.W., Hayward R.S.
Nucleic Acids Res. 12:5813-5821(1984) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli."
Bedwell D.M., Davis G.R., Gosink M., Post L.E., Nomura M., Kestler H., Zengel J.M., Lindahl L.
Nucleic Acids Res. 13:3891-3903(1985) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[4]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]"Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes."
Herold M., Nierhaus K.H.
J. Biol. Chem. 262:8826-8833(1987) [PubMed] [Europe PMC] [Abstract]
Cited for: ASSEMBLY MAP OF THE 50S SUBUNIT.
Strain: K12.
[7]"Comparative cross-linking study on the 50S ribosomal subunit from Escherichia coli."
Walleczek J., Martin T., Redl B., Stoeffler-Meilicke M., Stoeffler G.
Biochemistry 28:4099-4105(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: CROSS-LINKING TO L32.
[8]"Escherichia coli proteome analysis using the gene-protein database."
VanBogelen R.A., Abshire K.Z., Moldover B., Olson E.R., Neidhardt F.C.
Electrophoresis 18:1243-1251(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY 2D-GEL.
[9]"Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
Arnold R.J., Reilly J.P.
Anal. Biochem. 269:105-112(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
[10]"Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
Cell 113:789-801(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
Strain: MRE-600.
[11]"Structures of the bacterial ribosome at 3.5 A resolution."
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., Cate J.H.D.
Science 310:827-834(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
Strain: MRE-600.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X02543 Genomic DNA. Translation: CAA26396.1.
J01685 Genomic DNA. Translation: AAA24578.1.
X00766 Genomic DNA. Translation: CAA25338.1.
U18997 Genomic DNA. Translation: AAA58091.1.
U00096 Genomic DNA. Translation: AAC76319.1.
AP009048 Genomic DNA. Translation: BAE77997.1.
PIRR5EC17. B22884.
RefSeqNP_417753.1. NC_000913.3.
YP_492138.1. NC_007779.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1P85electron microscopy12.30L1-127[»]
1P86electron microscopy11.50L1-127[»]
1VS6X-ray3.46N1-127[»]
1VS8X-ray3.46N1-127[»]
1VT2X-ray3.30N1-127[»]
2AW4X-ray3.46N1-127[»]
2AWBX-ray3.46N1-127[»]
2GYAelectron microscopy15.00L3-116[»]
2GYCelectron microscopy15.00L3-116[»]
2I2TX-ray3.22N1-127[»]
2I2VX-ray3.22N1-127[»]
2J28electron microscopy8.00N1-127[»]
2QAMX-ray3.21N1-127[»]
2QAOX-ray3.21N1-127[»]
2QBAX-ray3.54N1-127[»]
2QBCX-ray3.54N1-127[»]
2QBEX-ray3.30N1-127[»]
2QBGX-ray3.30N1-127[»]
2QBIX-ray4.00N1-127[»]
2QBKX-ray4.00N1-127[»]
2QOVX-ray3.93N1-127[»]
2QOXX-ray3.93N1-127[»]
2QOZX-ray3.50N1-127[»]
2QP1X-ray3.50N1-127[»]
2RDOelectron microscopy9.10N1-127[»]
2WWQelectron microscopy5.80N1-120[»]
2Z4LX-ray4.45N1-127[»]
2Z4NX-ray4.45N1-127[»]
3BBXelectron microscopy10.00N1-127[»]
3E1Belectron microscopy-G1-127[»]
3E1Delectron microscopy-G1-127[»]
3FIKelectron microscopy6.70N1-120[»]
3I1NX-ray3.19N1-127[»]
3I1PX-ray3.19N1-127[»]
3I1RX-ray3.81N1-127[»]
3I1TX-ray3.81N1-127[»]
3I20X-ray3.71N1-127[»]
3I22X-ray3.71N1-127[»]
3IZTelectron microscopy-O1-127[»]
3IZUelectron microscopy-O1-127[»]
3J01electron microscopy-N1-127[»]
3J0Telectron microscopy12.10P1-127[»]
3J0Welectron microscopy14.70P1-127[»]
3J0Yelectron microscopy13.50P1-127[»]
3J11electron microscopy13.10P1-127[»]
3J12electron microscopy11.50P1-127[»]
3J14electron microscopy11.50P1-127[»]
3J19electron microscopy8.30N1-120[»]
3J37electron microscopy9.80R1-127[»]
3J4Xelectron microscopy12.00N1-120[»]
3J50electron microscopy20.00N1-120[»]
3J51electron microscopy17.00N1-120[»]
3J52electron microscopy12.00N1-120[»]
3J54electron microscopy13.00N1-120[»]
3J56electron microscopy15.00N1-120[»]
3J58electron microscopy17.00N1-120[»]
3J5Aelectron microscopy12.00N1-120[»]
3J5Celectron microscopy17.00N1-120[»]
3J5Eelectron microscopy17.00N1-120[»]
3J5Gelectron microscopy20.00N1-120[»]
3J5Ielectron microscopy15.00N1-120[»]
3J5Kelectron microscopy9.00N1-120[»]
3J5Oelectron microscopy6.80N1-127[»]
3J5Uelectron microscopy7.60P1-127[»]
3J5Welectron microscopy7.60Q1-127[»]
3KCRelectron microscopy-N1-127[»]
3OASX-ray3.25N1-120[»]
3OATX-ray3.25N1-120[»]
3OFCX-ray3.19N1-120[»]
3OFDX-ray3.19N1-120[»]
3OFQX-ray3.10N1-120[»]
3OFRX-ray3.10N1-120[»]
3OFZX-ray3.29N1-120[»]
3OG0X-ray3.29N1-120[»]
3ORBX-ray3.30N1-127[»]
3R8SX-ray3.00N1-120[»]
3R8TX-ray3.00N1-120[»]
3SGFX-ray3.20R1-127[»]
3UOSX-ray3.70R1-127[»]
4GARX-ray3.30N1-127[»]
4GAUX-ray3.30N1-127[»]
4KIXX-ray2.90N1-127[»]
4KIZX-ray2.90N1-127[»]
4KJ1X-ray2.90N1-127[»]
4KJ3X-ray2.90N1-127[»]
4KJ5X-ray2.90N1-127[»]
4KJ7X-ray2.90N1-127[»]
4KJ9X-ray2.90N1-127[»]
4KJBX-ray2.90N1-127[»]
ProteinModelPortalP0AG44.
SMRP0AG44. Positions 1-120.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-35801N.
IntActP0AG44. 135 interactions.
MINTMINT-1251899.
STRING511145.b3294.

Chemistry

ChEMBLCHEMBL2363135.

Proteomic databases

PaxDbP0AG44.
PRIDEP0AG44.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC76319; AAC76319; b3294.
BAE77997; BAE77997; BAE77997.
GeneID12934436.
947784.
KEGGecj:Y75_p3882.
eco:b3294.
PATRIC32122020. VBIEscCol129921_3387.

Organism-specific databases

EchoBASEEB0871.
EcoGeneEG10878. rplQ.

Phylogenomic databases

eggNOGCOG0203.
HOGENOMHOG000019780.
KOK02879.
OMAVVEPMIT.
OrthoDBEOG6GR3GR.
PhylomeDBP0AG44.
ProtClustDBPRK05591.

Enzyme and pathway databases

BioCycEcoCyc:EG10878-MONOMER.
ECOL316407:JW3256-MONOMER.

Gene expression databases

GenevestigatorP0AG44.

Family and domain databases

Gene3D3.90.1030.10. 1 hit.
HAMAPMF_01368. Ribosomal_L17.
InterProIPR000456. Ribosomal_L17.
[Graphical view]
PANTHERPTHR14413. PTHR14413. 1 hit.
PfamPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
SUPFAMSSF64263. SSF64263. 1 hit.
TIGRFAMsTIGR00059. L17. 1 hit.
PROSITEPS01167. RIBOSOMAL_L17. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP0AG44.
PROP0AG44.

Entry information

Entry nameRL17_ECOLI
AccessionPrimary (citable) accession number: P0AG44
Secondary accession number(s): P02416, Q2M6V9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: April 16, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene