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Reviewed, UniProtKB/Swiss-Prot P0AG44 (RL17_ECOLI)

Last modified June 16, 2009. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    50S ribosomal protein L17
Gene names
Name: rplQ
Ordered Locus Names: b3294, JW3256
OrganismEscherichia coli (strain K12) [Complete proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length127 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Requires L15 for assembly into the 50S subunit. HAMAP MF_01368

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L32. Ref.6

Sequence similarities

Belongs to the ribosomal protein L17P family.

Mass spectrometry

Molecular mass is 14364.7 Da from positions 1 - 127. Determined by MALDI. Ref.8

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12712750S ribosomal protein L17 HAMAP MF_01368
PRO_0000175524

Secondary structure

.................... 127
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P0AG44-1 [UniParc].

Last modified July 21, 1986. Version 1.
Checksum: D96DF17C07013A11

FASTA12714,365
        10         20         30         40         50         60 
MRHRKSGRQL NRNSSHRQAM FRNMAGSLVR HEIIKTTLPK AKELRRVVEP LITLAKTDSV 

        70         80         90        100        110        120 
ANRRLAFART RDNEIVAKLF NELGPRFASR AGGYTRILKC GFRAGDNAPM AYIELVDRSE 


KAEAAAE 

« Hide

References

« Hide 'large scale' references
[1]"The primary structure of protein L17 from the Escherichia coli ribosome."
Rombauts W., Feytons V., Wittmann-Liebold B.
FEBS Lett. 149:320-327(1982)
Cited for: PROTEIN SEQUENCE.
[2]"Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?"
Meek D.W., Hayward R.S.
Nucleic Acids Res. 12:5813-5821(1984) [PubMed: 6379605] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli."
Bedwell D.M., Davis G.R., Gosink M., Post L.E., Nomura M., Kestler H., Zengel J.M., Lindahl L.
Nucleic Acids Res. 13:3891-3903(1985) [PubMed: 2989779] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[4]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]"Incorporation of six additional proteins to complete the assembly map of the 50 S subunit from Escherichia coli ribosomes."
Herold M., Nierhaus K.H.
J. Biol. Chem. 262:8826-8833(1987) [PubMed: 3298242] [Abstract]
Cited for: ASSEMBLY MAP OF THE 50S SUBUNIT.
Strain: K12.
[7]"Comparative cross-linking study on the 50S ribosomal subunit from Escherichia coli."
Walleczek J., Martin T., Redl B., Stoeffler-Meilicke M., Stoeffler G.
Biochemistry 28:4099-4105(1989) [PubMed: 2665813] [Abstract]
Cited for: CROSS-LINKING TO L32.
[8]"Observation of Escherichia coli ribosomal proteins and their posttranslational modifications by mass spectrometry."
Arnold R.J., Reilly J.P.
Anal. Biochem. 269:105-112(1999) [PubMed: 10094780] [Abstract]
Cited for: MASS SPECTROMETRY.
Strain: K12 / ATCC 25404 / DSM 5698 / NCIMB 11290.
[9]"Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement."
Gao H., Sengupta J., Valle M., Korostelev A., Eswar N., Stagg S.M., Van Roey P., Agrawal R.K., Harvey S.C., Sali A., Chapman M.S., Frank J.
Cell 113:789-801(2003) [PubMed: 12809609] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (11.50 ANGSTROMS).
Strain: MRE-600.
[10]"Structures of the bacterial ribosome at 3.5 A resolution."
Schuwirth B.S., Borovinskaya M.A., Hau C.W., Zhang W., Vila-Sanjurjo A., Holton J.M., Cate J.H.D.
Science 310:827-834(2005) [PubMed: 16272117] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (3.46 ANGSTROMS) OF 2 DIFFERENT RIBOSOME STRUCTURES.
Strain: MRE-600.
+Additional computationally mapped references.

Cross-references

Sequence databases

X02543 Genomic DNA. Translation: CAA26396.1.
J01685 Genomic DNA. Translation: AAA24578.1.
X00766 Genomic DNA. Translation: CAA25338.1.
U18997 Genomic DNA. Translation: AAA58091.1.
U00096 Genomic DNA. Translation: AAC76319.1.
AP009048 Genomic DNA. Translation: BAE77997.1.
PIRR5EC17. B22884.
RefSeqAP_004496.1.
NP_417753.1.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1P85electron microscopy12.30L1-127[»]
1P86electron microscopy11.50L1-127[»]
1VS6X-ray3.46N1-127[»]
1VS8X-ray3.46N1-127[»]
2AW4X-ray3.46N1-127[»]
2AWBX-ray3.46N1-127[»]
2GYAelectron microscopy2.00L3-116[»]
2GYCelectron microscopy-L3-116[»]
2I2TX-ray3.22N1-127[»]
2I2VX-ray3.22N1-127[»]
2J28electron microscopy8.00N1-127[»]
2QAMX-ray3.21N1-127[»]
2QAOX-ray3.21N1-127[»]
2QBAX-ray3.54N1-127[»]
2QBCX-ray3.54N1-127[»]
2QBEX-ray3.30N1-127[»]
2QBGX-ray3.30N1-127[»]
2QBIX-ray4.00N1-127[»]
2QBKX-ray4.00N1-127[»]
2QOVX-ray3.93N1-127[»]
2QOXX-ray3.93N1-127[»]
2QOZX-ray3.50N1-127[»]
2QP1X-ray3.50N1-127[»]
2RDOelectron microscopy9.10N1-127[»]
2Z4LX-ray4.45N1-127[»]
2Z4NX-ray4.45N1-127[»]
3BBXelectron microscopy-N1-127[»]
3FIKelectron microscopy-N1-120[»]
ModBaseSearch...

2-D gel databases

ECO2DBASEI014.9. 6TH EDITION.

Genome annotation databases

GeneID947784.
GenomeReviewsGene locus JW3256 in contig AP009048_GR.
Gene locus b3294 in contig U00096_GR.
KEGGecj:JW3256.
eco:b3294.

Organism-specific databases

EchoBASEEB0871.
EcoGeneEG10878. rplQ.
CMRSearch...

Phylogenomic databases

HOGENOMP0AG44.
OMAP0AG44. TGDKAPM.

Enzyme and pathway databases

BioCycEcoCyc:EG10878-MON.

Family and domain databases

HAMAPMF_01368.
[Tree]
InterProIPR000456. Ribosomal_L17.
[Graphical view]
Gene3DG3DSA:3.90.1030.10. Ribosomal_L17. 1 hit.
PANTHERPTHR14413. Ribosomal_L17. 1 hit.
PfamPF01196. Ribosomal_L17. 1 hit.
[Graphical view]
ProDomPD004277. Ribosomal_L17. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR00059. L17. 1 hit.
PROSITEPS01167. RIBOSOMAL_L17. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL17_ECOLI
AccessionPrimary (citable) accession number: P0AG44
Secondary accession number(s): P02416, Q2M6V9
Entry history
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: June 16, 2009
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents