Probable sigma(54) modulation protein - Escherichia coli (strain K12)

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P0AFX0 (RP5M_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 49. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Probable sigma(54) modulation protein

Alternative name(s):
ORF3
ORF95

Gene names

Name:	yhbH
Ordered Locus Names:	b3203, JW3170

Organism

Escherichia coli (strain K12)

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	95 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Probably modulates the activity of sigma(54) (rpoN).
Sequence similarities	Belongs to the sigma(54) modulation protein family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	primary metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 95

Probable sigma(54) modulation protein

PRO_0000097417

Secondary structure

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

P0AFX0 [UniParc].

Last modified December 20, 2005. Version 1.
Checksum: 5B8F737E6E3A91AE
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FASTA

10,750

        10         20         30         40         50         60 
MQLNITGNNV EITEALREFV TAKFAKLEQY FDRINQVYVV LKVEKVTHTS DATLHVNGGE 

        70         80         90 
IHASAEGQDM YAAIDGLIDK LARQLTKHKD KLKQH

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Physical map location of the rpoN gene of Escherichia coli." Imaishi H., Gomada M., Inouye S., Nakazawa A. J. Bacteriol. 175:1550-1551(1993) [PubMed: 8444818] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12.
[2]	"Molecular analysis of the operon which encodes the RNA polymerase sigma factor sigma 54 of Escherichia coli." Jones D.H.A., Franklin C.F.H., Thomas C.M. Microbiology 140:1035-1043(1994) [PubMed: 8025669] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12.
[3]	"Novel proteins of the phosphotransferase system encoded within the rpoN operon of Escherichia coli. Enzyme IIANtr affects growth on organic nitrogen and the conditional lethality of an erats mutant." Powell B.S., Court D.L., Inada T., Nakamura Y., Michotey V., Cui X., Reizer A., Saier M.H. Jr., Reizer J. J. Biol. Chem. 270:4822-4839(1995) [PubMed: 7876255] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[5]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[6]	"Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography." Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B. Electrophoresis 20:2181-2195(1999) [PubMed: 10493123] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY. Strain: B / BL21.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

D12938 Genomic DNA. Translation: BAA02316.1.
Z27094 Genomic DNA. Translation: CAA81618.1.
U12684 Genomic DNA. Translation: AAB60164.1.
U18997 Genomic DNA. Translation: AAA58005.1.
U00096 Genomic DNA. Translation: AAC76235.1.
AP009048 Genomic DNA. Translation: BAE77247.1.

PIR

I76719.

RefSeq

NP_417670.1. NC_000913.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2RQL	NMR	-	A	1-95	[»]

ProteinModelPortal

P0AFX0.

SMR

P0AFX0. Positions 1-95.

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-48273N.

IntAct

P0AFX0. 4 interactions.

MINT

MINT-1249576.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBESCT00000003007; EBESCP00000003007; EBESCG00000002466.
EBESCT00000003008; EBESCP00000003008; EBESCG00000002466.
EBESCT00000016487; EBESCP00000015778; EBESCG00000015547.

GeneID

947718.

GenomeReviews

Gene locus JW3170 in contig AP009048_GR.
Gene locus b3203 in contig U00096_GR.

KEGG

ecj:JW3170.
eco:b3203.

PATRIC

32121826. VBIEscCol129921_3297.

Organism-specific databases

EchoBASE

EB1632.

EcoGene

EG11681. yhbH.

Phylogenomic databases

eggNOG

COG1544.

GeneTree

EBGT00050000009890.

HOGENOM

HBG675832.

OMA

DQINNVH.

PhylomeDB

P0AFX0.

ProtClustDB

PRK10470.

Enzyme and pathway databases

BioCyc

EcoCyc:EG11681-MONOMER.

Gene expression databases

Genevestigator

P0AFX0.

Family and domain databases

InterPro

IPR003489. Ribosomal_S30Ae/sigma54_mod.
[Graphical view]

Gene3D

G3DSA:3.30.160.100. Ribosomal_S30Ae/sigma54_mod. 1 hit.

K05808.

Pfam

PF02482. Ribosomal_S30AE. 1 hit.
[Graphical view]

SUPFAM

SSF69754. Ribosomal_S30Ae/sigma54_mod. 1 hit.

TIGRFAMs

TIGR00741. YfiA. 1 hit.

ProtoNet

Search...

Entry information

Entry name

RP5M_ECOLI

Accession

Primary (citable) accession number: P0AFX0
Secondary accession number(s): P31221, Q2M909

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 20, 2005
Last sequence update:	December 20, 2005
Last modified:	January 25, 2012
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Gene expression databases

Family and domain databases

Entry information

Relevant documents