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Protein

Phage shock protein D

Gene

pspD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

The phage shock protein (psp) operon (pspABCDE) may play a significant role in the competition for survival under nutrient- or energy-limited conditions.1 Publication

GO - Biological processi

  • phage shock Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Stress response

Enzyme and pathway databases

BioCyciEcoCyc:EG10779-MONOMER.
ECOL316407:JW1300-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phage shock protein D
Gene namesi
Name:pspD
Ordered Locus Names:b1307, JW1300
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10779. pspD.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: UniProtKB-SubCell
  • plasma membrane Source: EcoliWiki
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Cytoplasm, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000970781 – 73Phage shock protein DAdd BLAST73

Proteomic databases

PaxDbiP0AFV8.
PRIDEiP0AFV8.

Expressioni

Inductioni

By heat, ethanol, osmotic shock and infection by filamentous bacteriophages.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4263231. 5 interactors.
STRINGi511145.b1307.

Structurei

3D structure databases

ProteinModelPortaliP0AFV8.
SMRiP0AFV8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PspD family.Curated

Phylogenomic databases

eggNOGiENOG4105NNG. Bacteria.
ENOG4111WU3. LUCA.
HOGENOMiHOG000266569.
InParanoidiP0AFV8.
KOiK03971.
OMAiMNTVASR.

Family and domain databases

InterProiIPR014321. Phageshock_PspD.
[Graphical view]
PfamiPF09584. Phageshock_PspD. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02979. phageshock_pspD. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AFV8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNTRWQQAGQ KVKPGFKLAG KLVLLTALRY GPAGVAGWAI KSVARRPLKM
60 70
LLAVALEPLL SRAANKLAQR YKR
Length:73
Mass (Da):8,042
Last modified:December 20, 2005 - v1
Checksum:iF0B7317F3AEFD687
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X57560 Genomic DNA. Translation: CAA40792.1.
U00096 Genomic DNA. Translation: AAC74389.1.
AP009048 Genomic DNA. Translation: BAA14876.1.
PIRiS17124.
RefSeqiNP_415823.1. NC_000913.3.
WP_001295585.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74389; AAC74389; b1307.
BAA14876; BAA14876; BAA14876.
GeneIDi945635.
KEGGiecj:JW1300.
eco:b1307.
PATRICi32117886. VBIEscCol129921_1363.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X57560 Genomic DNA. Translation: CAA40792.1.
U00096 Genomic DNA. Translation: AAC74389.1.
AP009048 Genomic DNA. Translation: BAA14876.1.
PIRiS17124.
RefSeqiNP_415823.1. NC_000913.3.
WP_001295585.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFV8.
SMRiP0AFV8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263231. 5 interactors.
STRINGi511145.b1307.

Proteomic databases

PaxDbiP0AFV8.
PRIDEiP0AFV8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74389; AAC74389; b1307.
BAA14876; BAA14876; BAA14876.
GeneIDi945635.
KEGGiecj:JW1300.
eco:b1307.
PATRICi32117886. VBIEscCol129921_1363.

Organism-specific databases

EchoBASEiEB0772.
EcoGeneiEG10779. pspD.

Phylogenomic databases

eggNOGiENOG4105NNG. Bacteria.
ENOG4111WU3. LUCA.
HOGENOMiHOG000266569.
InParanoidiP0AFV8.
KOiK03971.
OMAiMNTVASR.

Enzyme and pathway databases

BioCyciEcoCyc:EG10779-MONOMER.
ECOL316407:JW1300-MONOMER.

Miscellaneous databases

PROiP0AFV8.

Family and domain databases

InterProiIPR014321. Phageshock_PspD.
[Graphical view]
PfamiPF09584. Phageshock_PspD. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02979. phageshock_pspD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiPSPD_ECOLI
AccessioniPrimary (citable) accession number: P0AFV8
Secondary accession number(s): P23856
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.