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Protein

Inner membrane protein YibH

Gene

yibH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • transmembrane transport Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11764-MONOMER.
ECOL316407:JW3571-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YibH
Gene namesi
Name:yibH
Ordered Locus Names:b3597, JW3571
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11764. yibH.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 33PeriplasmicSequence analysis
Transmembranei4 – 2421HelicalSequence analysisAdd
BLAST
Topological domaini25 – 262CytoplasmicSequence analysis
Transmembranei27 – 4721HelicalSequence analysisAdd
BLAST
Topological domaini48 – 547PeriplasmicSequence analysis
Transmembranei55 – 7521HelicalSequence analysisAdd
BLAST
Topological domaini76 – 232157CytoplasmicSequence analysisAdd
BLAST
Transmembranei233 – 25321HelicalSequence analysisAdd
BLAST
Topological domaini254 – 28027PeriplasmicSequence analysisAdd
BLAST
Transmembranei281 – 30121HelicalSequence analysisAdd
BLAST
Topological domaini302 – 3098CytoplasmicSequence analysis
Transmembranei310 – 33021HelicalSequence analysisAdd
BLAST
Topological domaini331 – 37848PeriplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 378378Inner membrane protein YibHPRO_0000201895Add
BLAST

Proteomic databases

PaxDbiP0AFV0.
PRIDEiP0AFV0.

Interactioni

Protein-protein interaction databases

BioGridi4261667. 268 interactions.
STRINGi511145.b3597.

Structurei

3D structure databases

ProteinModelPortaliP0AFV0.
SMRiP0AFV0. Positions 60-299.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EFX. Bacteria.
COG1566. LUCA.
HOGENOMiHOG000279244.
InParanoidiP0AFV0.
OMAiYTAICIA.
PhylomeDBiP0AFV0.

Family and domain databases

InterProiIPR032317. HlyD_D23.
IPR006143. RND_pump_MFP.
[Graphical view]
PfamiPF00529. HlyD. 1 hit.
PF16576. HlyD_D23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFV0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLLIVLTYV ALAWAVFKIF RIPVNQWTLA TAALGGVFLV SGLILLMNYN
60 70 80 90 100
HPYTFTAQKA VIAIPITPQV TGIVTEVTDK NNQLIQKGEV LFKLDPVRYQ
110 120 130 140 150
ARVDRLQADL MTATHNIKTL RAQLTEAQAN TTQVSAERDR LFKNYQRYLK
160 170 180 190 200
GSQAAVNPFS ERDIDDARQN FLAQDALVKG SVAEQAQIQS QLDSMVNGEQ
210 220 230 240 250
SQIVSLRAQL TEAKYNLEQT VIRAPSNGYV TQVLIRPGTY AAALPLRPVM
260 270 280 290 300
VFIPEQKRQI VAQFRQNSLL RLKPGDDAEV VFNALPGQVF HGKLTSILPV
310 320 330 340 350
VPGGSYQAQG VLQSLTVVPG TDGVLGTIEL DPNDDIDALP DGIYAQVAVY
360 370
SDHFSHVSVM RKVLLRMTSW MHYLYLDH
Length:378
Mass (Da):41,988
Last modified:December 20, 2005 - v1
Checksum:i19FB46D698357EA0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95068.1.
U00039 Genomic DNA. Translation: AAB18574.1.
U00096 Genomic DNA. Translation: AAC76621.1.
AP009048 Genomic DNA. Translation: BAE77696.1.
PIRiS47818.
RefSeqiNP_418054.1. NC_000913.3.
WP_000364939.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC76621; AAC76621; b3597.
BAE77696; BAE77696; BAE77696.
GeneIDi948110.
KEGGiecj:JW3571.
eco:b3597.
PATRICi32122677. VBIEscCol129921_3715.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95068.1.
U00039 Genomic DNA. Translation: AAB18574.1.
U00096 Genomic DNA. Translation: AAC76621.1.
AP009048 Genomic DNA. Translation: BAE77696.1.
PIRiS47818.
RefSeqiNP_418054.1. NC_000913.3.
WP_000364939.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP0AFV0.
SMRiP0AFV0. Positions 60-299.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261667. 268 interactions.
STRINGi511145.b3597.

Proteomic databases

PaxDbiP0AFV0.
PRIDEiP0AFV0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76621; AAC76621; b3597.
BAE77696; BAE77696; BAE77696.
GeneIDi948110.
KEGGiecj:JW3571.
eco:b3597.
PATRICi32122677. VBIEscCol129921_3715.

Organism-specific databases

EchoBASEiEB1714.
EcoGeneiEG11764. yibH.

Phylogenomic databases

eggNOGiENOG4105EFX. Bacteria.
COG1566. LUCA.
HOGENOMiHOG000279244.
InParanoidiP0AFV0.
OMAiYTAICIA.
PhylomeDBiP0AFV0.

Enzyme and pathway databases

BioCyciEcoCyc:EG11764-MONOMER.
ECOL316407:JW3571-MONOMER.

Miscellaneous databases

PROiP0AFV0.

Family and domain databases

InterProiIPR032317. HlyD_D23.
IPR006143. RND_pump_MFP.
[Graphical view]
PfamiPF00529. HlyD. 1 hit.
PF16576. HlyD_D23. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIBH_ECOLI
AccessioniPrimary (citable) accession number: P0AFV0
Secondary accession number(s): P32107, Q2M7R0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: September 7, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.