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Protein

Inner membrane ABC transporter permease protein YdcV

Gene

ydcV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YdcSTUV; probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YDCV-MONOMER.
ECOL316407:JW1438-MONOMER.
RETL1328306-WGS:GSTH-3737-MONOMER.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane ABC transporter permease protein YdcV
Gene namesi
Name:ydcV
Ordered Locus Names:b1443, JW1438
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13765. ydcV.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1212CytoplasmicSequence analysisAdd
BLAST
Transmembranei13 – 3321HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini34 – 7037PeriplasmicSequence analysisAdd
BLAST
Transmembranei71 – 9121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini92 – 1009CytoplasmicSequence analysis
Transmembranei101 – 12121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini122 – 1287PeriplasmicSequence analysis
Transmembranei129 – 14921HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini150 – 18940CytoplasmicSequence analysisAdd
BLAST
Transmembranei190 – 21021HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini211 – 23626PeriplasmicSequence analysisAdd
BLAST
Transmembranei237 – 25721HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini258 – 2647CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 264264Inner membrane ABC transporter permease protein YdcVPRO_0000060243Add
BLAST

Proteomic databases

PaxDbiP0AFR9.

Interactioni

Protein-protein interaction databases

BioGridi4260190. 42 interactions.
STRINGi511145.b1443.

Structurei

3D structure databases

ProteinModelPortaliP0AFR9.
SMRiP0AFR9. Positions 55-246.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini65 – 252188ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105NRK. Bacteria.
ENOG410XPIA. LUCA.
HOGENOMiHOG000263700.
InParanoidiP0AFR9.
KOiK02053.
OMAiEDHTSIN.
OrthoDBiEOG66XBH9.
PhylomeDBiP0AFR9.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFR9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSERAPFFL KLAAWGGVVF LHFPILIIAA YAFNTEDAAF SFPPQGLTLR
60 70 80 90 100
WFSVAAQRSD ILDAVTLSLK VAALATLIAL VLGTLAAAAL WRRDFFGKNA
110 120 130 140 150
ISLLLLLPIA LPGIVTGLAL LTAFKTINLE PGFFTIVVGH ATFCVVVVFN
160 170 180 190 200
NVIARFRRTS WSLVEASMDL GANGWQTFRY VVLPNLSSAL LAGGMLAFAL
210 220 230 240 250
SFDEIIVTTF TAGHERTLPL WLLNQLGRPR DVPVTNVVAL LVMLVTTLPI
260
LGAWWLTREG DNGQ
Length:264
Mass (Da):28,722
Last modified:December 20, 2005 - v1
Checksum:i611F6181E57DB826
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74525.1.
AP009048 Genomic DNA. Translation: BAA15072.1.
PIRiF64896.
RefSeqiNP_415960.1. NC_000913.3.
WP_000555458.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74525; AAC74525; b1443.
BAA15072; BAA15072; BAA15072.
GeneIDi945903.
KEGGiecj:JW1438.
eco:b1443.
PATRICi32118176. VBIEscCol129921_1508.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74525.1.
AP009048 Genomic DNA. Translation: BAA15072.1.
PIRiF64896.
RefSeqiNP_415960.1. NC_000913.3.
WP_000555458.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFR9.
SMRiP0AFR9. Positions 55-246.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260190. 42 interactions.
STRINGi511145.b1443.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AFR9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74525; AAC74525; b1443.
BAA15072; BAA15072; BAA15072.
GeneIDi945903.
KEGGiecj:JW1438.
eco:b1443.
PATRICi32118176. VBIEscCol129921_1508.

Organism-specific databases

EchoBASEiEB3528.
EcoGeneiEG13765. ydcV.

Phylogenomic databases

eggNOGiENOG4105NRK. Bacteria.
ENOG410XPIA. LUCA.
HOGENOMiHOG000263700.
InParanoidiP0AFR9.
KOiK02053.
OMAiEDHTSIN.
OrthoDBiEOG66XBH9.
PhylomeDBiP0AFR9.

Enzyme and pathway databases

BioCyciEcoCyc:YDCV-MONOMER.
ECOL316407:JW1438-MONOMER.
RETL1328306-WGS:GSTH-3737-MONOMER.

Miscellaneous databases

PROiP0AFR9.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYDCV_ECOLI
AccessioniPrimary (citable) accession number: P0AFR9
Secondary accession number(s): P77505
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: April 13, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.