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Protein

Inner membrane ABC transporter permease protein YcjO

Gene

ycjO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YcjNOP. Probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YCJO-MONOMER.
ECOL316407:JW1304-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane ABC transporter permease protein YcjO
Gene namesi
Name:ycjO
Ordered Locus Names:b1311, JW1304
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13912. ycjO.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 12PeriplasmicSequence analysisAdd BLAST12
Transmembranei13 – 33HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini34 – 77CytoplasmicSequence analysisAdd BLAST44
Transmembranei78 – 98HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini99 – 110PeriplasmicSequence analysisAdd BLAST12
Transmembranei111 – 131HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini132 – 135CytoplasmicSequence analysis4
Transmembranei136 – 156HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini157 – 162PeriplasmicSequence analysis6
Transmembranei163 – 183HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini184 – 214CytoplasmicSequence analysisAdd BLAST31
Transmembranei215 – 235HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini236 – 261PeriplasmicSequence analysisAdd BLAST26
Transmembranei262 – 282HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini283 – 293CytoplasmicSequence analysisAdd BLAST11

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000602391 – 293Inner membrane ABC transporter permease protein YcjOAdd BLAST293

Proteomic databases

PaxDbiP0AFR7.
PRIDEiP0AFR7.

Interactioni

Protein-protein interaction databases

BioGridi4263232. 8 interactors.
STRINGi511145.b1311.

Structurei

3D structure databases

ProteinModelPortaliP0AFR7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini73 – 283ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST211

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105HS6. Bacteria.
COG1175. LUCA.
HOGENOMiHOG000220407.
InParanoidiP0AFR7.
KOiK02025.
OMAiPLFLGVW.
PhylomeDBiP0AFR7.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRLFSGRSD MPFALLLLAP SLLLLGGLVA WPMVSNIEIS FLRLPLNPNI
60 70 80 90 100
ESTFVGVSNY VRILSDPGFW HSLWMTVWYT ALVVAGSTVL GLAVAMFFNR
110 120 130 140 150
EFRLRKTARS LVILSYVTPS ISLVFAWKYM FNNGYGIVNY LGVDLLHLYE
160 170 180 190 200
QAPLWFDNPG SSFVLVVLFA IWRYFPYAFI SFLAILQTID KSLYEAAEMD
210 220 230 240 250
GANAWQRFRI VTLPAIMPVL ATVVTLRTIW MFYMFADVYL LTTKVDILGV
260 270 280 290
YLYKTAFAFN DLGKAAAISV VLFIIIFAVI LLTRKRVNLN GNK
Length:293
Mass (Da):33,225
Last modified:December 20, 2005 - v1
Checksum:i7F33DAD9CD2E50A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74393.1.
AP009048 Genomic DNA. Translation: BAA14887.1.
PIRiB64880.
RefSeqiNP_415827.1. NC_000913.3.
WP_001080790.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74393; AAC74393; b1311.
BAA14887; BAA14887; BAA14887.
GeneIDi945888.
KEGGiecj:JW1304.
eco:b1311.
PATRICi32117894. VBIEscCol129921_1367.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74393.1.
AP009048 Genomic DNA. Translation: BAA14887.1.
PIRiB64880.
RefSeqiNP_415827.1. NC_000913.3.
WP_001080790.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFR7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263232. 8 interactors.
STRINGi511145.b1311.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AFR7.
PRIDEiP0AFR7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74393; AAC74393; b1311.
BAA14887; BAA14887; BAA14887.
GeneIDi945888.
KEGGiecj:JW1304.
eco:b1311.
PATRICi32117894. VBIEscCol129921_1367.

Organism-specific databases

EchoBASEiEB3671.
EcoGeneiEG13912. ycjO.

Phylogenomic databases

eggNOGiENOG4105HS6. Bacteria.
COG1175. LUCA.
HOGENOMiHOG000220407.
InParanoidiP0AFR7.
KOiK02025.
OMAiPLFLGVW.
PhylomeDBiP0AFR7.

Enzyme and pathway databases

BioCyciEcoCyc:YCJO-MONOMER.
ECOL316407:JW1304-MONOMER.

Miscellaneous databases

PROiP0AFR7.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCJO_ECOLI
AccessioniPrimary (citable) accession number: P0AFR7
Secondary accession number(s): P76840, P77653
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.