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Protein

Uncharacterized protein YciO

Gene

yciO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6635-MONOMER.
ECOL316407:JW5196-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YciO
Gene namesi
Name:yciO
Ordered Locus Names:b1267, JW5196
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12967. yciO.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002020141 – 206Uncharacterized protein YciOAdd BLAST206

Proteomic databases

PaxDbiP0AFR4.
PRIDEiP0AFR4.

Interactioni

Protein-protein interaction databases

BioGridi4260126. 22 interactors.
MINTiMINT-1308678.
STRINGi511145.b1267.

Structurei

Secondary structure

1206
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 6Combined sources4
Beta strandi9 – 11Combined sources3
Helixi14 – 25Combined sources12
Beta strandi30 – 34Combined sources5
Beta strandi37 – 43Combined sources7
Helixi47 – 57Combined sources11
Beta strandi66 – 68Combined sources3
Helixi72 – 78Combined sources7
Helixi83 – 90Combined sources8
Beta strandi94 – 103Combined sources10
Helixi109 – 111Combined sources3
Turni114 – 116Combined sources3
Beta strandi118 – 122Combined sources5
Helixi127 – 136Combined sources10
Beta strandi140 – 144Combined sources5
Beta strandi151 – 153Combined sources3
Helixi157 – 164Combined sources8
Turni165 – 167Combined sources3
Beta strandi169 – 173Combined sources5
Beta strandi183 – 186Combined sources4
Helixi188 – 190Combined sources3
Beta strandi193 – 196Combined sources4
Helixi203 – 205Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K7JX-ray1.40A1-206[»]
1KK9X-ray2.10A1-206[»]
ProteinModelPortaliP0AFR4.
SMRiP0AFR4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AFR4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 200YrdC-likePROSITE-ProRule annotationAdd BLAST187

Sequence similaritiesi

Belongs to the SUA5 family.Curated
Contains 1 YrdC-like domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4107RTD. Bacteria.
COG0009. LUCA.
HOGENOMiHOG000076162.
InParanoidiP0AFR4.
OMAiRGCGDTA.
PhylomeDBiP0AFR4.

Family and domain databases

Gene3Di3.90.870.10. 1 hit.
InterProiIPR017945. DHBP_synth_RibB-like_a/b_dom.
IPR006070. YrdC-like_dom.
[Graphical view]
PfamiPF01300. Sua5_yciO_yrdC. 1 hit.
[Graphical view]
SUPFAMiSSF55821. SSF55821. 1 hit.
TIGRFAMsiTIGR00057. TIGR00057. 1 hit.
PROSITEiPS51163. YRDC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFR4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQFFYIHPD NPQQRLINQA VEIVRKGGVI VYPTDSGYAL GCKIEDKNAM
60 70 80 90 100
ERICRIRQLP DGHNFTLMCR DLSELSTYSF VDNVAFRLMK NNTPGNYTFI
110 120 130 140 150
LKGTKEVPRR LLQEKRKTIG MRVPSNPIAQ ALLEALGEPM LSTSLMLPGS
160 170 180 190 200
EFTESDPEEI KDRLEKQVDL IIHGGYLGQK PTTVIDLTDD TPVVVREGVG

DVKPFL
Length:206
Mass (Da):23,212
Last modified:December 20, 2005 - v1
Checksum:iBFE565F4087E48B4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74349.2.
AP009048 Genomic DNA. Translation: BAA14801.2.
M38366 Genomic DNA. No translation available.
U18111 Genomic DNA. Translation: AAB59987.1.
RefSeqiNP_415783.6. NC_000913.3.
WP_001295575.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74349; AAC74349; b1267.
BAA14801; BAA14801; BAA14801.
GeneIDi945854.
KEGGiecj:JW5196.
eco:b1267.
PATRICi32117792. VBIEscCol129921_1316.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74349.2.
AP009048 Genomic DNA. Translation: BAA14801.2.
M38366 Genomic DNA. No translation available.
U18111 Genomic DNA. Translation: AAB59987.1.
RefSeqiNP_415783.6. NC_000913.3.
WP_001295575.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K7JX-ray1.40A1-206[»]
1KK9X-ray2.10A1-206[»]
ProteinModelPortaliP0AFR4.
SMRiP0AFR4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260126. 22 interactors.
MINTiMINT-1308678.
STRINGi511145.b1267.

Proteomic databases

PaxDbiP0AFR4.
PRIDEiP0AFR4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74349; AAC74349; b1267.
BAA14801; BAA14801; BAA14801.
GeneIDi945854.
KEGGiecj:JW5196.
eco:b1267.
PATRICi32117792. VBIEscCol129921_1316.

Organism-specific databases

EchoBASEiEB2796.
EcoGeneiEG12967. yciO.

Phylogenomic databases

eggNOGiENOG4107RTD. Bacteria.
COG0009. LUCA.
HOGENOMiHOG000076162.
InParanoidiP0AFR4.
OMAiRGCGDTA.
PhylomeDBiP0AFR4.

Enzyme and pathway databases

BioCyciEcoCyc:G6635-MONOMER.
ECOL316407:JW5196-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AFR4.
PROiP0AFR4.

Family and domain databases

Gene3Di3.90.870.10. 1 hit.
InterProiIPR017945. DHBP_synth_RibB-like_a/b_dom.
IPR006070. YrdC-like_dom.
[Graphical view]
PfamiPF01300. Sua5_yciO_yrdC. 1 hit.
[Graphical view]
SUPFAMiSSF55821. SSF55821. 1 hit.
TIGRFAMsiTIGR00057. TIGR00057. 1 hit.
PROSITEiPS51163. YRDC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCIO_ECOLI
AccessioniPrimary (citable) accession number: P0AFR4
Secondary accession number(s): P45847
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.