Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane transport permease YbhS

Gene

ybhS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YBHS-MONOMER.
ECOL316407:JW0777-MONOMER.
RETL1328306-WGS:GSTH-3308-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport permease YbhS
Gene namesi
Name:ybhS
Ordered Locus Names:b0793, JW0777
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13675. ybhS.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2828PeriplasmicSequence analysisAdd
BLAST
Transmembranei29 – 4921HelicalSequence analysisAdd
BLAST
Topological domaini50 – 181132CytoplasmicSequence analysisAdd
BLAST
Transmembranei182 – 20221HelicalSequence analysisAdd
BLAST
Topological domaini203 – 23432PeriplasmicSequence analysisAdd
BLAST
Transmembranei235 – 25521HelicalSequence analysisAdd
BLAST
Topological domaini256 – 2616CytoplasmicSequence analysis
Transmembranei262 – 28221HelicalSequence analysisAdd
BLAST
Topological domaini283 – 2919PeriplasmicSequence analysis
Transmembranei292 – 31221HelicalSequence analysisAdd
BLAST
Topological domaini313 – 32210CytoplasmicSequence analysis
Transmembranei323 – 34321HelicalSequence analysisAdd
BLAST
Topological domaini344 – 3452PeriplasmicSequence analysis
Transmembranei346 – 36621HelicalSequence analysisAdd
BLAST
Topological domaini367 – 37711CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 377377Inner membrane transport permease YbhSPRO_0000183005Add
BLAST

Proteomic databases

PaxDbiP0AFQ2.

Interactioni

Protein-protein interaction databases

BioGridi4261835. 7 interactions.
IntActiP0AFQ2. 5 interactions.
STRINGi511145.b0793.

Structurei

3D structure databases

ProteinModelPortaliP0AFQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini145 – 375231ABC transmembrane type-2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270977.
InParanoidiP0AFQ2.
KOiK01992.
OMAiPYRGSLW.
PhylomeDBiP0AFQ2.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNPILSWRR VRALCVKETR QIVRDPSSWL IAVVIPLLLL FIFGYGINLD
60 70 80 90 100
SSKLRVGILL EQRSEAALDF THTMTGSPYI DATISDNRQE LIAKMQAGKI
110 120 130 140 150
RGLVVIPVDF AEQMERANAT APIQVITDGS EPNTANFVQG YVEGIWQIWQ
160 170 180 190 200
MQRAEDNGQT FEPLIDVQTR YWFNPAAISQ HFIIPGAVTI IMTVIGAILT
210 220 230 240 250
SLVVAREWER GTMEALLSTE ITRTELLLCK LIPYYFLGML AMLLCMLVSV
260 270 280 290 300
FILGVPYRGS LLILFFISSL FLLSTLGMGL LISTITRNQF NAAQVALNAA
310 320 330 340 350
FLPSIMLSGF IFQIDSMPAV IRAVTYIIPA RYFVSTLQSL FLAGNIPVVL
360 370
VVNVLFLIAS AVMFIGLTWL KTKRRLD
Length:377
Mass (Da):42,060
Last modified:December 20, 2005 - v1
Checksum:iC25E40FA4586EEFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73880.1.
AP009048 Genomic DNA. Translation: BAA35453.1.
PIRiA64816.
RefSeqiNP_415314.1. NC_000913.3.
WP_000070131.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73880; AAC73880; b0793.
BAA35453; BAA35453; BAA35453.
GeneIDi945411.
KEGGiecj:JW0777.
eco:b0793.
PATRICi32116787. VBIEscCol129921_0819.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73880.1.
AP009048 Genomic DNA. Translation: BAA35453.1.
PIRiA64816.
RefSeqiNP_415314.1. NC_000913.3.
WP_000070131.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFQ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261835. 7 interactions.
IntActiP0AFQ2. 5 interactions.
STRINGi511145.b0793.

Proteomic databases

PaxDbiP0AFQ2.

Protocols and materials databases

DNASUi945411.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73880; AAC73880; b0793.
BAA35453; BAA35453; BAA35453.
GeneIDi945411.
KEGGiecj:JW0777.
eco:b0793.
PATRICi32116787. VBIEscCol129921_0819.

Organism-specific databases

EchoBASEiEB3439.
EcoGeneiEG13675. ybhS.

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270977.
InParanoidiP0AFQ2.
KOiK01992.
OMAiPYRGSLW.
PhylomeDBiP0AFQ2.

Enzyme and pathway databases

BioCyciEcoCyc:YBHS-MONOMER.
ECOL316407:JW0777-MONOMER.
RETL1328306-WGS:GSTH-3308-MONOMER.

Miscellaneous databases

PROiP0AFQ2.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBHS_ECOLI
AccessioniPrimary (citable) accession number: P0AFQ2
Secondary accession number(s): P75775
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: September 7, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.