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Protein

Inner membrane transport permease YbhR

Gene

ybhR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • transmembrane transport Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YBHR-MONOMER.
ECOL316407:JW5803-MONOMER.
RETL1328306-WGS:GSTH-3309-MONOMER.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport permease YbhR
Gene namesi
Name:ybhR
Ordered Locus Names:b0792, JW5803
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13674. ybhR.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2424CytoplasmicSequence analysisAdd
BLAST
Transmembranei25 – 4521HelicalSequence analysisAdd
BLAST
Topological domaini46 – 173128PeriplasmicSequence analysisAdd
BLAST
Transmembranei174 – 19421HelicalSequence analysisAdd
BLAST
Topological domaini195 – 22228CytoplasmicSequence analysisAdd
BLAST
Transmembranei223 – 24321HelicalSequence analysisAdd
BLAST
Topological domaini244 – 25310PeriplasmicSequence analysis
Transmembranei254 – 27421HelicalSequence analysisAdd
BLAST
Topological domaini275 – 28410CytoplasmicSequence analysis
Transmembranei285 – 30521HelicalSequence analysisAdd
BLAST
Topological domaini306 – 33934PeriplasmicSequence analysisAdd
BLAST
Transmembranei340 – 36021HelicalSequence analysisAdd
BLAST
Topological domaini361 – 3688CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 368368Inner membrane transport permease YbhRPRO_0000183002Add
BLAST

Proteomic databases

PaxDbiP0AFP9.

Interactioni

Protein-protein interaction databases

BioGridi4261834. 13 interactions.
DIPiDIP-48088N.
STRINGi511145.b0792.

Structurei

3D structure databases

ProteinModelPortaliP0AFP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini129 – 366238ABC transmembrane type-2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270979.
InParanoidiP0AFP9.
KOiK01992.
OMAiSLEIVWG.
OrthoDBiEOG6M9DZ3.
PhylomeDBiP0AFP9.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PRINTSiPR00164. ABC2TRNSPORT.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFHRLWTLIR KELQSLLREP QTRAILILPV LIQVILFPFA ATLEVTNATI
60 70 80 90 100
AIYDEDNGEH SVELTQRFAR ASAFTHVLLL KSPQEIRPTI DTQKALLLVR
110 120 130 140 150
FPADFSRKLD TFQTAPLQLI LDGRNSNSAQ IAANYLQQIV KNYQQELLEG
160 170 180 190 200
KPKPNNSELV VRNWYNPNLD YKWFVVPSLI AMITTIGVMI VTSLSVARER
210 220 230 240 250
EQGTLDQLLV SPLTTWQIFI GKAVPALIVA TFQATIVLAI GIWAYQIPFA
260 270 280 290 300
GSLALFYFTM VIYGLSLVGF GLLISSLCST QQQAFIGVFV FMMPAILLSG
310 320 330 340 350
YVSPVENMPV WLQNLTWINP IRHFTDITKQ IYLKDASLDI VWNSLWPLLV
360
ITATTGSAAY AMFRRKVM
Length:368
Mass (Da):41,566
Last modified:December 20, 2005 - v1
Checksum:iCD9380B094EB86F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73879.1.
AP009048 Genomic DNA. Translation: BAA35451.2.
PIRiH64815.
RefSeqiNP_415313.1. NC_000913.3.
WP_000469031.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73879; AAC73879; b0792.
BAA35451; BAA35451; BAA35451.
GeneIDi945403.
KEGGiecj:JW5803.
eco:b0792.
PATRICi32116785. VBIEscCol129921_0818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73879.1.
AP009048 Genomic DNA. Translation: BAA35451.2.
PIRiH64815.
RefSeqiNP_415313.1. NC_000913.3.
WP_000469031.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFP9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261834. 13 interactions.
DIPiDIP-48088N.
STRINGi511145.b0792.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AFP9.

Protocols and materials databases

DNASUi945403.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73879; AAC73879; b0792.
BAA35451; BAA35451; BAA35451.
GeneIDi945403.
KEGGiecj:JW5803.
eco:b0792.
PATRICi32116785. VBIEscCol129921_0818.

Organism-specific databases

EchoBASEiEB3438.
EcoGeneiEG13674. ybhR.

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270979.
InParanoidiP0AFP9.
KOiK01992.
OMAiSLEIVWG.
OrthoDBiEOG6M9DZ3.
PhylomeDBiP0AFP9.

Enzyme and pathway databases

BioCyciEcoCyc:YBHR-MONOMER.
ECOL316407:JW5803-MONOMER.
RETL1328306-WGS:GSTH-3309-MONOMER.

Miscellaneous databases

PROiP0AFP9.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PRINTSiPR00164. ABC2TRNSPORT.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBHR_ECOLI
AccessioniPrimary (citable) accession number: P0AFP9
Secondary accession number(s): P75774, Q9ZBC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: January 20, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.