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Protein

Inner membrane transport permease YbhR

Gene

ybhR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • transmembrane transport Source: GO_Central
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YBHR-MONOMER.
ECOL316407:JW5803-MONOMER.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport permease YbhR
Gene namesi
Name:ybhR
Ordered Locus Names:b0792, JW5803
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13674. ybhR.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 24CytoplasmicSequence analysisAdd BLAST24
Transmembranei25 – 45HelicalSequence analysisAdd BLAST21
Topological domaini46 – 173PeriplasmicSequence analysisAdd BLAST128
Transmembranei174 – 194HelicalSequence analysisAdd BLAST21
Topological domaini195 – 222CytoplasmicSequence analysisAdd BLAST28
Transmembranei223 – 243HelicalSequence analysisAdd BLAST21
Topological domaini244 – 253PeriplasmicSequence analysis10
Transmembranei254 – 274HelicalSequence analysisAdd BLAST21
Topological domaini275 – 284CytoplasmicSequence analysis10
Transmembranei285 – 305HelicalSequence analysisAdd BLAST21
Topological domaini306 – 339PeriplasmicSequence analysisAdd BLAST34
Transmembranei340 – 360HelicalSequence analysisAdd BLAST21
Topological domaini361 – 368CytoplasmicSequence analysis8

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001830021 – 368Inner membrane transport permease YbhRAdd BLAST368

Proteomic databases

PaxDbiP0AFP9.
PRIDEiP0AFP9.

Interactioni

Protein-protein interaction databases

BioGridi4261834. 13 interactors.
DIPiDIP-48088N.
STRINGi511145.b0792.

Structurei

3D structure databases

ProteinModelPortaliP0AFP9.
SMRiP0AFP9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini129 – 366ABC transmembrane type-2PROSITE-ProRule annotationAdd BLAST238

Sequence similaritiesi

Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270979.
InParanoidiP0AFP9.
KOiK01992.
OMAiSLEIVWG.
PhylomeDBiP0AFP9.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PRINTSiPR00164. ABC2TRNSPORT.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AFP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFHRLWTLIR KELQSLLREP QTRAILILPV LIQVILFPFA ATLEVTNATI
60 70 80 90 100
AIYDEDNGEH SVELTQRFAR ASAFTHVLLL KSPQEIRPTI DTQKALLLVR
110 120 130 140 150
FPADFSRKLD TFQTAPLQLI LDGRNSNSAQ IAANYLQQIV KNYQQELLEG
160 170 180 190 200
KPKPNNSELV VRNWYNPNLD YKWFVVPSLI AMITTIGVMI VTSLSVARER
210 220 230 240 250
EQGTLDQLLV SPLTTWQIFI GKAVPALIVA TFQATIVLAI GIWAYQIPFA
260 270 280 290 300
GSLALFYFTM VIYGLSLVGF GLLISSLCST QQQAFIGVFV FMMPAILLSG
310 320 330 340 350
YVSPVENMPV WLQNLTWINP IRHFTDITKQ IYLKDASLDI VWNSLWPLLV
360
ITATTGSAAY AMFRRKVM
Length:368
Mass (Da):41,566
Last modified:December 20, 2005 - v1
Checksum:iCD9380B094EB86F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73879.1.
AP009048 Genomic DNA. Translation: BAA35451.2.
PIRiH64815.
RefSeqiNP_415313.1. NC_000913.3.
WP_000469031.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73879; AAC73879; b0792.
BAA35451; BAA35451; BAA35451.
GeneIDi945403.
KEGGiecj:JW5803.
eco:b0792.
PATRICi32116785. VBIEscCol129921_0818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73879.1.
AP009048 Genomic DNA. Translation: BAA35451.2.
PIRiH64815.
RefSeqiNP_415313.1. NC_000913.3.
WP_000469031.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AFP9.
SMRiP0AFP9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261834. 13 interactors.
DIPiDIP-48088N.
STRINGi511145.b0792.

Protein family/group databases

TCDBi3.A.1.105.15. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AFP9.
PRIDEiP0AFP9.

Protocols and materials databases

DNASUi945403.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73879; AAC73879; b0792.
BAA35451; BAA35451; BAA35451.
GeneIDi945403.
KEGGiecj:JW5803.
eco:b0792.
PATRICi32116785. VBIEscCol129921_0818.

Organism-specific databases

EchoBASEiEB3438.
EcoGeneiEG13674. ybhR.

Phylogenomic databases

eggNOGiENOG4107QWP. Bacteria.
COG0842. LUCA.
HOGENOMiHOG000270979.
InParanoidiP0AFP9.
KOiK01992.
OMAiSLEIVWG.
PhylomeDBiP0AFP9.

Enzyme and pathway databases

BioCyciEcoCyc:YBHR-MONOMER.
ECOL316407:JW5803-MONOMER.

Miscellaneous databases

PROiP0AFP9.

Family and domain databases

InterProiIPR000412. ABC_2_transport.
[Graphical view]
PRINTSiPR00164. ABC2TRNSPORT.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBHR_ECOLI
AccessioniPrimary (citable) accession number: P0AFP9
Secondary accession number(s): P75774, Q9ZBC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.