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P0AFH8

- OSMY_ECOLI

UniProt

P0AFH8 - OSMY_ECOLI

Protein

Osmotically-inducible protein Y

Gene

osmY

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (20 Dec 2005)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. response to osmotic stress Source: EcoCyc

    Enzyme and pathway databases

    BioCyciEcoCyc:EG11391-MONOMER.
    ECOL316407:JW4338-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Osmotically-inducible protein Y
    Gene namesi
    Name:osmY
    Ordered Locus Names:b4376, JW4338
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG11391. osmY.

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: EcoCyc

    Keywords - Cellular componenti

    Periplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 28283 PublicationsAdd
    BLAST
    Chaini29 – 201173Osmotically-inducible protein YPRO_0000021953Add
    BLAST

    Proteomic databases

    PaxDbiP0AFH8.
    PRIDEiP0AFH8.

    Expressioni

    Inductioni

    By elevated osmotic pressure in the growth medium.

    Gene expression databases

    GenevestigatoriP0AFH8.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-47968N.
    IntActiP0AFH8. 3 interactions.
    STRINGi511145.b4376.

    Structurei

    3D structure databases

    ProteinModelPortaliP0AFH8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini55 – 12369BON 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini134 – 20168BON 2PROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 2 BON domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, Signal

    Phylogenomic databases

    eggNOGiCOG2823.
    HOGENOMiHOG000127831.
    KOiK04065.
    OMAiGYMDDSG.
    OrthoDBiEOG6B3669.
    PhylomeDBiP0AFH8.

    Family and domain databases

    InterProiIPR007055. BON_dom.
    IPR014004. Transpt-assoc_nodulatn_dom_bac.
    [Graphical view]
    PfamiPF04972. BON. 2 hits.
    [Graphical view]
    SMARTiSM00749. BON. 2 hits.
    [Graphical view]
    PROSITEiPS50914. BON. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P0AFH8-1 [UniParc]FASTAAdd to Basket

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    MTMTRLKISK TLLAVMLTSA VATGSAYAEN NAQTTNESAG QKVDSSMNKV    50
    GNFMDDSAIT AKVKAALVDH DNIKSTDISV KTDQKVVTLS GFVESQAQAE 100
    EAVKVAKGVE GVTSVSDKLH VRDAKEGSVK GYAGDTATTS EIKAKLLADD 150
    IVPSRHVKVE TTDGVVQLSG TVDSQAQSDR AESIAKAVDG VKSVKNDLKT 200
    K 201
    Length:201
    Mass (Da):21,074
    Last modified:December 20, 2005 - v1
    Checksum:iBF74D4388D984B93
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M89635 Unassigned DNA. Translation: AAA16621.1.
    U14003 Genomic DNA. Translation: AAA97272.1.
    U00096 Genomic DNA. Translation: AAC77329.1.
    AP009048 Genomic DNA. Translation: BAE78364.1.
    S67278 Genomic DNA. Translation: AAP14005.1.
    PIRiA41899.
    RefSeqiNP_418793.1. NC_000913.3.
    YP_492505.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC77329; AAC77329; b4376.
    BAE78364; BAE78364; BAE78364.
    GeneIDi12933797.
    948895.
    KEGGiecj:Y75_p4259.
    eco:b4376.
    PATRICi32124362. VBIEscCol129921_4521.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M89635 Unassigned DNA. Translation: AAA16621.1 .
    U14003 Genomic DNA. Translation: AAA97272.1 .
    U00096 Genomic DNA. Translation: AAC77329.1 .
    AP009048 Genomic DNA. Translation: BAE78364.1 .
    S67278 Genomic DNA. Translation: AAP14005.1 .
    PIRi A41899.
    RefSeqi NP_418793.1. NC_000913.3.
    YP_492505.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali P0AFH8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-47968N.
    IntActi P0AFH8. 3 interactions.
    STRINGi 511145.b4376.

    Proteomic databases

    PaxDbi P0AFH8.
    PRIDEi P0AFH8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC77329 ; AAC77329 ; b4376 .
    BAE78364 ; BAE78364 ; BAE78364 .
    GeneIDi 12933797.
    948895.
    KEGGi ecj:Y75_p4259.
    eco:b4376.
    PATRICi 32124362. VBIEscCol129921_4521.

    Organism-specific databases

    EchoBASEi EB1364.
    EcoGenei EG11391. osmY.

    Phylogenomic databases

    eggNOGi COG2823.
    HOGENOMi HOG000127831.
    KOi K04065.
    OMAi GYMDDSG.
    OrthoDBi EOG6B3669.
    PhylomeDBi P0AFH8.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG11391-MONOMER.
    ECOL316407:JW4338-MONOMER.

    Miscellaneous databases

    PROi P0AFH8.

    Gene expression databases

    Genevestigatori P0AFH8.

    Family and domain databases

    InterProi IPR007055. BON_dom.
    IPR014004. Transpt-assoc_nodulatn_dom_bac.
    [Graphical view ]
    Pfami PF04972. BON. 2 hits.
    [Graphical view ]
    SMARTi SM00749. BON. 2 hits.
    [Graphical view ]
    PROSITEi PS50914. BON. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli."
      Yim H.H., Villarejo M.
      J. Bacteriol. 174:3637-3644(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 29-43.
      Strain: K12.
    2. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
      Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
      Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    5. "Complex transcriptional control of the sigma s-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli."
      Lange R., Barth M., Hengge-Aronis R.
      J. Bacteriol. 175:7910-7917(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-12.
    6. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
      Link A.J., Robison K., Church G.M.
      Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 29-40.
      Strain: K12 / EMG2.
    7. Cited for: PROTEIN SEQUENCE OF 29-32.
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

    Entry informationi

    Entry nameiOSMY_ECOLI
    AccessioniPrimary (citable) accession number: P0AFH8
    Secondary accession number(s): P27291, Q2M5U2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 20, 2005
    Last sequence update: December 20, 2005
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3