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Protein

Osmotically-inducible protein Y

Gene

osmY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  1. response to osmotic stress Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11391-MONOMER.
ECOL316407:JW4338-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Osmotically-inducible protein Y
Gene namesi
Name:osmY
Ordered Locus Names:b4376, JW4338
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11391. osmY.

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 28283 PublicationsAdd
BLAST
Chaini29 – 201173Osmotically-inducible protein YPRO_0000021953Add
BLAST

Proteomic databases

PaxDbiP0AFH8.
PRIDEiP0AFH8.

Expressioni

Inductioni

By elevated osmotic pressure in the growth medium.

Gene expression databases

GenevestigatoriP0AFH8.

Interactioni

Protein-protein interaction databases

DIPiDIP-47968N.
IntActiP0AFH8. 3 interactions.
STRINGi511145.b4376.

Structurei

3D structure databases

ProteinModelPortaliP0AFH8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 12369BON 1PROSITE-ProRule annotationAdd
BLAST
Domaini134 – 20168BON 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 BON domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiCOG2823.
HOGENOMiHOG000127831.
InParanoidiP0AFH8.
KOiK04065.
OMAiDISVKTH.
OrthoDBiEOG6B3669.
PhylomeDBiP0AFH8.

Family and domain databases

InterProiIPR007055. BON_dom.
IPR014004. Transpt-assoc_nodulatn_dom_bac.
[Graphical view]
PfamiPF04972. BON. 2 hits.
[Graphical view]
SMARTiSM00749. BON. 2 hits.
[Graphical view]
PROSITEiPS50914. BON. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AFH8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTMTRLKISK TLLAVMLTSA VATGSAYAEN NAQTTNESAG QKVDSSMNKV
60 70 80 90 100
GNFMDDSAIT AKVKAALVDH DNIKSTDISV KTDQKVVTLS GFVESQAQAE
110 120 130 140 150
EAVKVAKGVE GVTSVSDKLH VRDAKEGSVK GYAGDTATTS EIKAKLLADD
160 170 180 190 200
IVPSRHVKVE TTDGVVQLSG TVDSQAQSDR AESIAKAVDG VKSVKNDLKT

K
Length:201
Mass (Da):21,074
Last modified:December 20, 2005 - v1
Checksum:iBF74D4388D984B93
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M89635 Unassigned DNA. Translation: AAA16621.1.
U14003 Genomic DNA. Translation: AAA97272.1.
U00096 Genomic DNA. Translation: AAC77329.1.
AP009048 Genomic DNA. Translation: BAE78364.1.
S67278 Genomic DNA. Translation: AAP14005.1.
PIRiA41899.
RefSeqiNP_418793.1. NC_000913.3.
YP_492505.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC77329; AAC77329; b4376.
BAE78364; BAE78364; BAE78364.
GeneIDi12933797.
948895.
KEGGiecj:Y75_p4259.
eco:b4376.
PATRICi32124362. VBIEscCol129921_4521.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M89635 Unassigned DNA. Translation: AAA16621.1.
U14003 Genomic DNA. Translation: AAA97272.1.
U00096 Genomic DNA. Translation: AAC77329.1.
AP009048 Genomic DNA. Translation: BAE78364.1.
S67278 Genomic DNA. Translation: AAP14005.1.
PIRiA41899.
RefSeqiNP_418793.1. NC_000913.3.
YP_492505.1. NC_007779.1.

3D structure databases

ProteinModelPortaliP0AFH8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-47968N.
IntActiP0AFH8. 3 interactions.
STRINGi511145.b4376.

Proteomic databases

PaxDbiP0AFH8.
PRIDEiP0AFH8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77329; AAC77329; b4376.
BAE78364; BAE78364; BAE78364.
GeneIDi12933797.
948895.
KEGGiecj:Y75_p4259.
eco:b4376.
PATRICi32124362. VBIEscCol129921_4521.

Organism-specific databases

EchoBASEiEB1364.
EcoGeneiEG11391. osmY.

Phylogenomic databases

eggNOGiCOG2823.
HOGENOMiHOG000127831.
InParanoidiP0AFH8.
KOiK04065.
OMAiDISVKTH.
OrthoDBiEOG6B3669.
PhylomeDBiP0AFH8.

Enzyme and pathway databases

BioCyciEcoCyc:EG11391-MONOMER.
ECOL316407:JW4338-MONOMER.

Miscellaneous databases

PROiP0AFH8.

Gene expression databases

GenevestigatoriP0AFH8.

Family and domain databases

InterProiIPR007055. BON_dom.
IPR014004. Transpt-assoc_nodulatn_dom_bac.
[Graphical view]
PfamiPF04972. BON. 2 hits.
[Graphical view]
SMARTiSM00749. BON. 2 hits.
[Graphical view]
PROSITEiPS50914. BON. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli."
    Yim H.H., Villarejo M.
    J. Bacteriol. 174:3637-3644(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 29-43.
    Strain: K12.
  2. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Complex transcriptional control of the sigma s-dependent stationary-phase-induced and osmotically regulated osmY (csi-5) gene suggests novel roles for Lrp, cyclic AMP (cAMP) receptor protein-cAMP complex, and integration host factor in the stationary-phase response of Escherichia coli."
    Lange R., Barth M., Hengge-Aronis R.
    J. Bacteriol. 175:7910-7917(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-12.
  6. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 29-40.
    Strain: K12 / EMG2.
  7. Cited for: PROTEIN SEQUENCE OF 29-32.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiOSMY_ECOLI
AccessioniPrimary (citable) accession number: P0AFH8
Secondary accession number(s): P27291, Q2M5U2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: January 7, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.