Reviewed, UniProtKB/Swiss-Prot P0AF90 (YJGD_ECOLI)

Names and origin

Protein names

Recommended name:
    Uncharacterized protein yjgD

Gene names

Name:	yjgD
Ordered Locus Names:	b4255, JW4212

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	138 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

To H.influenzae HI0700.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
fabI	P0AEK4	1	EBI-544031,EBI-370029
glnB	P0A9Z1	1	EBI-544031,EBI-551053

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 138	138	Uncharacterized protein yjgD		PRO_0000169759
Regions
	Compositional bias	116 – 134	19	Asp/Glu-rich (acidic)

Sequences

	Sequence		Length	Mass (Da)
	P0AF90-1 [UniParc]. Last modified December 20, 2005. Version 1. Checksum: E23D6DBE6547FD0F	FASTA	138	15,603
	10 20 30 40 50 60 MANPEQLEEQ REETRLIIEE LLEDGSDPDA LYTIEHHLSA DDLETLEKAA VEAFKLGYEV 70 80 90 100 110 120 TDPEELEVED GDIVICCDIL SECALNADLI DAQVEQLMTL AEKFDVEYDG WGTYFEDPNG 130 EDGDDEDFVD EDDDGVRH

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes." Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R. Nucleic Acids Res. 23:2105-2119(1995) [PubMed: 7610040] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"Homologous control sites and DNA transcription starts in the related argF and argI genes of Escherichia coli K12." Piette J., Cunin R., van Vliet F., Charlier D.R.M., Crabeel M., Ota Y., Glansdorff N. EMBO J. 1:853-857(1982) [PubMed: 6329710] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-19.
[5]	"Isolation of the gene (miaE) encoding the hydroxylase involved in the synthesis of 2-methylthio-cis-ribozeatin in tRNA of Salmonella typhimurium and characterization of mutants." Persson B.C., Bjoerk G.R. J. Bacteriol. 175:7776-7785(1993) [PubMed: 8253666] [Abstract] Cited for: IDENTIFICATION.

Cross-references

Sequence databases
EMBLGenBankDDBJ	U14003 Genomic DNA. Translation: AAA97151.1. U00096 Genomic DNA. Translation: AAC77212.1. AP009048 Genomic DNA. Translation: BAE78252.1. M24186 Genomic DNA. No translation available.
PIR	S56480.
RefSeq	AP_004751.1. NP_418676.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	P0AF90. 15 interactions.
Genome annotation databases
GeneID	948773.
GenomeReviews	Gene locus JW4212 in contig AP009048_GR. Gene locus b4255 in contig U00096_GR.
KEGG	ecj:JW4212. eco:b4255.
Organism-specific databases
EchoBASE	EB2347.
EcoGene	EG12453. yjgD.
CMR	Search...
Phylogenomic databases
HOGENOM	P0AF90.
OMA	P0AF90. YTIEHHF.
Enzyme and pathway databases
BioCyc	EcoCyc:G7885-MON.
Family and domain databases
InterPro	IPR009671. DUF1260. IPR016716. UCP018193. [Graphical view]
Pfam	PF06877. DUF1260. 1 hit. [Graphical view]
PIRSF	PIRSF018193. UCP018193. 1 hit.
ProtoNet	Search...

Entry information

Entry name

YJGD_ECOLI

Accession

Primary (citable) accession number: P0AF90
Secondary accession number(s): P37163, Q2M654

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 20, 2005
Last sequence update:	December 20, 2005
Last modified:	June 16, 2009
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)