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Protein

Sel1-repeat-containing protein YjcO

Gene

yjcO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11951-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Sel1-repeat-containing protein YjcO
Gene namesi
Name:yjcO
Ordered Locus Names:b4078, JW4039
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11951 yjcO

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 17Sequence analysisAdd BLAST17
ChainiPRO_000001393918 – 229Sel1-repeat-containing protein YjcOAdd BLAST212

Proteomic databases

PaxDbiP0AF56
PRIDEiP0AF56

Interactioni

Protein-protein interaction databases

BioGridi4261972, 8 interactors
STRINGi316385.ECDH10B_4269

Structurei

3D structure databases

ProteinModelPortaliP0AF56
SMRiP0AF56
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati48 – 66Sel1-like 1CuratedAdd BLAST19
Repeati85 – 101Sel1-like 2CuratedAdd BLAST17
Repeati143 – 173Sel1-like 3CuratedAdd BLAST31
Repeati180 – 215Sel1-like 4CuratedAdd BLAST36

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiENOG41082ND Bacteria
COG0790 LUCA
HOGENOMiHOG000126942
InParanoidiP0AF56
KOiK07126
OMAiPKNDARA
PhylomeDBiP0AF56

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR006597 Sel1-like
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF08238 Sel1, 4 hits
SMARTiView protein in SMART
SM00671 SEL1, 4 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AF56-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKIIALMLF LTFFAHANDS EPGSQYLKAA EAGDRRAQYF LADSWFSSGD
60 70 80 90 100
LSKAEYWAQK AADSGDADAC ALLAQIKITN PVSLDYPQAK VLAEKAAQAG
110 120 130 140 150
SKEGEVTLAH ILVNTQAGKP DYPKAISLLE NASEDLENDS AVDAQMLLGL
160 170 180 190 200
IYANGVGIKA DDDKATWYFK RSSAISRTGY SEYWAGMMFL NGEEGFIEKN
210 220
KQKALHWLNL SCMEGFDTGC EEFEKLTNG
Length:229
Mass (Da):25,079
Last modified:December 20, 2005 - v1
Checksum:i54A4C7E738828E15
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA Translation: AAC43172.1
U00096 Genomic DNA Translation: AAD13461.1
AP009048 Genomic DNA Translation: BAE78080.1
PIRiE65216
RefSeqiNP_418502.1, NC_000913.3
WP_000719886.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAD13461; AAD13461; b4078
BAE78080; BAE78080; BAE78080
GeneIDi948586
KEGGiecj:JW4039
eco:b4078
PATRICifig|511145.12.peg.4202

Similar proteinsi

Entry informationi

Entry nameiYJCO_ECOLI
AccessioniPrimary (citable) accession number: P0AF56
Secondary accession number(s): P32713, Q2M6M6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: March 28, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health