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Protein

Inner membrane protein YjcH

Gene

yjcH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:YJCH-MONOMER.
ECOL316407:JW4029-MONOMER.

Protein family/group databases

TCDBi9.B.136.1.1. the 2tms membrane protein, yjch (yjch) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YjcH
Gene namesi
Name:yjcH
Ordered Locus Names:b4068, JW4029
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11943. yjcH.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 24CytoplasmicSequence analysisAdd BLAST24
Transmembranei25 – 47HelicalSequence analysisAdd BLAST23
Topological domaini48 – 61PeriplasmicSequence analysisAdd BLAST14
Transmembranei62 – 84HelicalSequence analysisAdd BLAST23
Topological domaini85 – 104CytoplasmicSequence analysisAdd BLAST20

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001697241 – 104Inner membrane protein YjcHAdd BLAST104

Proteomic databases

PaxDbiP0AF54.
PRIDEiP0AF54.

Interactioni

Protein-protein interaction databases

BioGridi4262674. 320 interactors.
STRINGi511145.b4068.

Structurei

3D structure databases

ProteinModelPortaliP0AF54.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41062QD. Bacteria.
COG3162. LUCA.
HOGENOMiHOG000242230.
InParanoidiP0AF54.
OMAiKRGRFAW.
PhylomeDBiP0AF54.

Family and domain databases

InterProiIPR007436. DUF485.
[Graphical view]
PfamiPF04341. DUF485. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AF54-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGTIYQRIE DNAHFRELVE KRQRFATILS IIMLAVYIGF ILLIAFAPGW
60 70 80 90 100
LGTPLNPNTS VTRGIPIGVG VIVISFVLTG IYIWRANGEF DRLNNEVLHE

VQAS
Length:104
Mass (Da):11,672
Last modified:December 20, 2005 - v1
Checksum:i1158228D44FFB85F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43162.1.
U00096 Genomic DNA. Translation: AAC77038.1.
AP009048 Genomic DNA. Translation: BAE78070.1.
PIRiC65215.
RefSeqiNP_418492.1. NC_000913.3.
WP_001014565.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77038; AAC77038; b4068.
BAE78070; BAE78070; BAE78070.
GeneIDi948574.
KEGGiecj:JW4029.
eco:b4068.
PATRICi32123685. VBIEscCol129921_4191.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43162.1.
U00096 Genomic DNA. Translation: AAC77038.1.
AP009048 Genomic DNA. Translation: BAE78070.1.
PIRiC65215.
RefSeqiNP_418492.1. NC_000913.3.
WP_001014565.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AF54.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262674. 320 interactors.
STRINGi511145.b4068.

Protein family/group databases

TCDBi9.B.136.1.1. the 2tms membrane protein, yjch (yjch) family.

Proteomic databases

PaxDbiP0AF54.
PRIDEiP0AF54.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77038; AAC77038; b4068.
BAE78070; BAE78070; BAE78070.
GeneIDi948574.
KEGGiecj:JW4029.
eco:b4068.
PATRICi32123685. VBIEscCol129921_4191.

Organism-specific databases

EchoBASEiEB1887.
EcoGeneiEG11943. yjcH.

Phylogenomic databases

eggNOGiENOG41062QD. Bacteria.
COG3162. LUCA.
HOGENOMiHOG000242230.
InParanoidiP0AF54.
OMAiKRGRFAW.
PhylomeDBiP0AF54.

Enzyme and pathway databases

BioCyciEcoCyc:YJCH-MONOMER.
ECOL316407:JW4029-MONOMER.

Miscellaneous databases

PROiP0AF54.

Family and domain databases

InterProiIPR007436. DUF485.
[Graphical view]
PfamiPF04341. DUF485. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJCH_ECOLI
AccessioniPrimary (citable) accession number: P0AF54
Secondary accession number(s): P32706, Q2M6N6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.