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Protein

Uncharacterized protein YjbR

Gene

yjbR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11936-MONOMER.
ECOL316407:JW4018-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YjbR
Gene namesi
Name:yjbR
Ordered Locus Names:b4057, JW4018
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11936. yjbR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001697151 – 118Uncharacterized protein YjbRAdd BLAST118

Proteomic databases

PaxDbiP0AF50.
PRIDEiP0AF50.

Interactioni

Protein-protein interaction databases

BioGridi4262669. 9 interactors.
IntActiP0AF50. 1 interactor.
STRINGi511145.b4057.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 10Combined sources8
Beta strandi17 – 21Combined sources5
Turni22 – 25Combined sources4
Beta strandi26 – 33Combined sources8
Beta strandi35 – 39Combined sources5
Beta strandi47 – 52Combined sources6
Helixi54 – 62Combined sources9
Turni75 – 77Combined sources3
Beta strandi78 – 82Combined sources5
Turni84 – 86Combined sources3
Helixi89 – 105Combined sources17
Helixi109 – 117Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2FKINMR-A1-118[»]
ProteinModelPortaliP0AF50.
SMRiP0AF50.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0AF50.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105MSB. Bacteria.
COG2315. LUCA.
HOGENOMiHOG000013133.
InParanoidiP0AF50.
OMAiKVGDVMF.
PhylomeDBiP0AF50.

Family and domain databases

InterProiIPR007351. YjbR.
[Graphical view]
PfamiPF04237. YjbR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AF50-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTISELLQYC MAKPGAEQSV HNDWKATQIK VEDVLFAMVK EVENRPAVSL
60 70 80 90 100
KTSPELAELL RQQHSDVRPS RHLNKAHWST VYLDGSLPDS QIYYLVDASY
110
QQAVNLLPEE KRKLLVQL
Length:118
Mass (Da):13,519
Last modified:December 20, 2005 - v1
Checksum:iEE62FB333CED568B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti10C → S AA sequence (PubMed:9868784).Curated1
Sequence conflicti68R → G in AAC43151 (PubMed:8265357).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43151.1.
U00096 Genomic DNA. Translation: AAC77027.1.
AP009048 Genomic DNA. Translation: BAE78059.1.
PIRiH65213.
RefSeqiNP_418481.1. NC_000913.3.
WP_000155657.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77027; AAC77027; b4057.
BAE78059; BAE78059; BAE78059.
GeneIDi948560.
KEGGiecj:JW4018.
eco:b4057.
PATRICi32123659. VBIEscCol129921_4178.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43151.1.
U00096 Genomic DNA. Translation: AAC77027.1.
AP009048 Genomic DNA. Translation: BAE78059.1.
PIRiH65213.
RefSeqiNP_418481.1. NC_000913.3.
WP_000155657.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2FKINMR-A1-118[»]
ProteinModelPortaliP0AF50.
SMRiP0AF50.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262669. 9 interactors.
IntActiP0AF50. 1 interactor.
STRINGi511145.b4057.

Proteomic databases

PaxDbiP0AF50.
PRIDEiP0AF50.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77027; AAC77027; b4057.
BAE78059; BAE78059; BAE78059.
GeneIDi948560.
KEGGiecj:JW4018.
eco:b4057.
PATRICi32123659. VBIEscCol129921_4178.

Organism-specific databases

EchoBASEiEB1880.
EcoGeneiEG11936. yjbR.

Phylogenomic databases

eggNOGiENOG4105MSB. Bacteria.
COG2315. LUCA.
HOGENOMiHOG000013133.
InParanoidiP0AF50.
OMAiKVGDVMF.
PhylomeDBiP0AF50.

Enzyme and pathway databases

BioCyciEcoCyc:EG11936-MONOMER.
ECOL316407:JW4018-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0AF50.
PROiP0AF50.

Family and domain databases

InterProiIPR007351. YjbR.
[Graphical view]
PfamiPF04237. YjbR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJBR_ECOLI
AccessioniPrimary (citable) accession number: P0AF50
Secondary accession number(s): P32699, Q2M6P7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.