Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YijD

Gene

yijD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11395-MONOMER.
ECOL316407:JW3936-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YijD
Gene namesi
Name:yijD
Ordered Locus Names:b3964, JW3936
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11395. yijD.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 8CytoplasmicSequence analysis8
Transmembranei9 – 28HelicalSequence analysisAdd BLAST20
Topological domaini29 – 31PeriplasmicSequence analysis3
Transmembranei32 – 50HelicalSequence analysisAdd BLAST19
Topological domaini51 – 61CytoplasmicSequence analysisAdd BLAST11
Transmembranei62 – 84HelicalSequence analysisAdd BLAST23
Topological domaini85 – 88PeriplasmicSequence analysis4
Transmembranei89 – 108HelicalSequence analysisAdd BLAST20
Topological domaini109 – 119CytoplasmicSequence analysis1 PublicationAdd BLAST11

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

No alteration in fatty acid composition.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001696981 – 119Inner membrane protein YijDAdd BLAST119

Proteomic databases

PaxDbiP0AF40.
PRIDEiP0AF40.

Interactioni

Protein-protein interaction databases

BioGridi4262183. 10 interactors.
IntActiP0AF40. 2 interactors.
STRINGi511145.b3964.

Structurei

3D structure databases

ProteinModelPortaliP0AF40.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108Y73. Bacteria.
ENOG4111S45. LUCA.
HOGENOMiHOG000270375.
OMAiGSNFFAI.

Family and domain databases

InterProiIPR009867. DUF1422.
[Graphical view]
PfamiPF07226. DUF1422. 1 hit.
[Graphical view]
ProDomiPD076479. DUF1422. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P0AF40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQANQDRGT LLLALVAGLS INGTFAALFS SIVPFSVFPI ISLVLTVYCL
60 70 80 90 100
HQRYLNRTMP VGLPGLAAAC FILGVLLYST VVRAEYPDIG SNFFPAVLSV
110
IMVFWIGAKM RNRKQEVAE
Length:119
Mass (Da):13,024
Last modified:December 20, 2005 - v1
Checksum:i29177570EAF20F3B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti13L → LL in CAA46824 (PubMed:1447162).Curated1
Sequence conflicti94F → L in CAA46824 (PubMed:1447162).Curated1
Sequence conflicti100 – 110VIMVFWIGAKM → SLWCSGLARRW in CAA46824 (PubMed:1447162).CuratedAdd BLAST11

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66026 Genomic DNA. Translation: CAA46824.1.
U00006 Genomic DNA. Translation: AAC43070.1.
U00096 Genomic DNA. Translation: AAC76946.1.
AP009048 Genomic DNA. Translation: BAE77347.1.
PIRiG65203.
S21565.
RefSeqiNP_418399.1. NC_000913.3.
WP_000806411.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76946; AAC76946; b3964.
BAE77347; BAE77347; BAE77347.
GeneIDi948459.
KEGGiecj:JW3936.
eco:b3964.
PATRICi32123449. VBIEscCol129921_4085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66026 Genomic DNA. Translation: CAA46824.1.
U00006 Genomic DNA. Translation: AAC43070.1.
U00096 Genomic DNA. Translation: AAC76946.1.
AP009048 Genomic DNA. Translation: BAE77347.1.
PIRiG65203.
S21565.
RefSeqiNP_418399.1. NC_000913.3.
WP_000806411.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AF40.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262183. 10 interactors.
IntActiP0AF40. 2 interactors.
STRINGi511145.b3964.

Proteomic databases

PaxDbiP0AF40.
PRIDEiP0AF40.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76946; AAC76946; b3964.
BAE77347; BAE77347; BAE77347.
GeneIDi948459.
KEGGiecj:JW3936.
eco:b3964.
PATRICi32123449. VBIEscCol129921_4085.

Organism-specific databases

EchoBASEiEB1368.
EcoGeneiEG11395. yijD.

Phylogenomic databases

eggNOGiENOG4108Y73. Bacteria.
ENOG4111S45. LUCA.
HOGENOMiHOG000270375.
OMAiGSNFFAI.

Enzyme and pathway databases

BioCyciEcoCyc:EG11395-MONOMER.
ECOL316407:JW3936-MONOMER.

Miscellaneous databases

PROiP0AF40.

Family and domain databases

InterProiIPR009867. DUF1422.
[Graphical view]
PfamiPF07226. DUF1422. 1 hit.
[Graphical view]
ProDomiPD076479. DUF1422. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYIJD_ECOLI
AccessioniPrimary (citable) accession number: P0AF40
Secondary accession number(s): P27308, Q2M8Q9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Probably part of the fabR-yijD operon.1 Publication

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.