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Protein

Inner membrane protein YijD

Gene

yijD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11395-MONOMER.
ECOL316407:JW3936-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YijD
Gene namesi
Name:yijD
Ordered Locus Names:b3964, JW3936
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11395. yijD.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 88CytoplasmicSequence analysis
Transmembranei9 – 2820HelicalSequence analysisAdd
BLAST
Topological domaini29 – 313PeriplasmicSequence analysis
Transmembranei32 – 5019HelicalSequence analysisAdd
BLAST
Topological domaini51 – 6111CytoplasmicSequence analysisAdd
BLAST
Transmembranei62 – 8423HelicalSequence analysisAdd
BLAST
Topological domaini85 – 884PeriplasmicSequence analysis
Transmembranei89 – 10820HelicalSequence analysisAdd
BLAST
Topological domaini109 – 11911CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 119119Inner membrane protein YijDPRO_0000169698Add
BLAST

Proteomic databases

PaxDbiP0AF40.

Interactioni

Protein-protein interaction databases

BioGridi4262183. 10 interactions.
IntActiP0AF40. 2 interactions.
STRINGi511145.b3964.

Structurei

3D structure databases

ProteinModelPortaliP0AF40.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108Y73. Bacteria.
ENOG4111S45. LUCA.
HOGENOMiHOG000270375.
OMAiGSNFFAI.

Family and domain databases

InterProiIPR009867. DUF1422.
[Graphical view]
PfamiPF07226. DUF1422. 1 hit.
[Graphical view]
ProDomiPD076479. DUF1422. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P0AF40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQANQDRGT LLLALVAGLS INGTFAALFS SIVPFSVFPI ISLVLTVYCL
60 70 80 90 100
HQRYLNRTMP VGLPGLAAAC FILGVLLYST VVRAEYPDIG SNFFPAVLSV
110
IMVFWIGAKM RNRKQEVAE
Length:119
Mass (Da):13,024
Last modified:December 20, 2005 - v1
Checksum:i29177570EAF20F3B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131L → LL in CAA46824 (PubMed:1447162).Curated
Sequence conflicti94 – 941F → L in CAA46824 (PubMed:1447162).Curated
Sequence conflicti100 – 11011VIMVFWIGAKM → SLWCSGLARRW in CAA46824 (PubMed:1447162).CuratedAdd
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66026 Genomic DNA. Translation: CAA46824.1.
U00006 Genomic DNA. Translation: AAC43070.1.
U00096 Genomic DNA. Translation: AAC76946.1.
AP009048 Genomic DNA. Translation: BAE77347.1.
PIRiG65203.
S21565.
RefSeqiNP_418399.1. NC_000913.3.
WP_000806411.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76946; AAC76946; b3964.
BAE77347; BAE77347; BAE77347.
GeneIDi948459.
KEGGiecj:JW3936.
eco:b3964.
PATRICi32123449. VBIEscCol129921_4085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66026 Genomic DNA. Translation: CAA46824.1.
U00006 Genomic DNA. Translation: AAC43070.1.
U00096 Genomic DNA. Translation: AAC76946.1.
AP009048 Genomic DNA. Translation: BAE77347.1.
PIRiG65203.
S21565.
RefSeqiNP_418399.1. NC_000913.3.
WP_000806411.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AF40.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262183. 10 interactions.
IntActiP0AF40. 2 interactions.
STRINGi511145.b3964.

Proteomic databases

PaxDbiP0AF40.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76946; AAC76946; b3964.
BAE77347; BAE77347; BAE77347.
GeneIDi948459.
KEGGiecj:JW3936.
eco:b3964.
PATRICi32123449. VBIEscCol129921_4085.

Organism-specific databases

EchoBASEiEB1368.
EcoGeneiEG11395. yijD.

Phylogenomic databases

eggNOGiENOG4108Y73. Bacteria.
ENOG4111S45. LUCA.
HOGENOMiHOG000270375.
OMAiGSNFFAI.

Enzyme and pathway databases

BioCyciEcoCyc:EG11395-MONOMER.
ECOL316407:JW3936-MONOMER.

Miscellaneous databases

PROiP0AF40.

Family and domain databases

InterProiIPR009867. DUF1422.
[Graphical view]
PfamiPF07226. DUF1422. 1 hit.
[Graphical view]
ProDomiPD076479. DUF1422. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYIJD_ECOLI
AccessioniPrimary (citable) accession number: P0AF40
Secondary accession number(s): P27308, Q2M8Q9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: December 20, 2005
Last modified: September 7, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.