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Protein

Inner membrane protein YjiG

Gene

yjiG

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7926-MONOMER.
ECOL316407:JW4292-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YjiG
Gene namesi
Name:yjiG
Ordered Locus Names:b4329, JW4292
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12568. yjiG.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3131PeriplasmicSequence analysisAdd
BLAST
Transmembranei32 – 5221HelicalSequence analysisAdd
BLAST
Topological domaini53 – 6816CytoplasmicSequence analysisAdd
BLAST
Transmembranei69 – 8921HelicalSequence analysisAdd
BLAST
Transmembranei90 – 11021HelicalSequence analysisAdd
BLAST
Topological domaini111 – 13222CytoplasmicSequence analysisAdd
BLAST
Transmembranei133 – 15321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 153153Inner membrane protein YjiGPRO_0000201932Add
BLAST

Proteomic databases

PaxDbiP0AEH8.

Interactioni

Protein-protein interaction databases

BioGridi4261006. 4 interactions.
IntActiP0AEH8. 1 interaction.
STRINGi511145.b4329.

Structurei

3D structure databases

ProteinModelPortaliP0AEH8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SpmB family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108P2H. Bacteria.
COG0700. LUCA.
HOGENOMiHOG000111645.
OMAiCVINALV.
OrthoDBiEOG6C0183.

Family and domain databases

InterProiIPR011642. Gate_dom.
[Graphical view]
PfamiPF07670. Gate. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AEH8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTQVRKNVM DMFIDGARRG FTIATTNLLP NVVMAFVIIQ ALKITGLLDW
60 70 80 90 100
VGHICEPVMA LWGLPGEAAT VLLAALMSMG GAVGVAASLA TAGALTGHDV
110 120 130 140 150
TVLLPAMYLM GNPVQNVGRC LGTAEVNAKY YPHIITVCVI NALLSIWVMQ

LIV
Length:153
Mass (Da):16,193
Last modified:December 6, 2005 - v1
Checksum:iE1FE45E93DD90CE7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U15029 Genomic DNA. Translation: AAC43298.1.
U14003 Genomic DNA. Translation: AAA97225.1.
U00096 Genomic DNA. Translation: AAC77285.1.
AP009048 Genomic DNA. Translation: BAE78322.1.
PIRiA55889.
RefSeqiNP_418749.1. NC_000913.3.
WP_000211971.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77285; AAC77285; b4329.
BAE78322; BAE78322; BAE78322.
GeneIDi948854.
KEGGiecj:JW4292.
eco:b4329.
PATRICi32124260. VBIEscCol129921_4473.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U15029 Genomic DNA. Translation: AAC43298.1.
U14003 Genomic DNA. Translation: AAA97225.1.
U00096 Genomic DNA. Translation: AAC77285.1.
AP009048 Genomic DNA. Translation: BAE78322.1.
PIRiA55889.
RefSeqiNP_418749.1. NC_000913.3.
WP_000211971.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AEH8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261006. 4 interactions.
IntActiP0AEH8. 1 interaction.
STRINGi511145.b4329.

Proteomic databases

PaxDbiP0AEH8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77285; AAC77285; b4329.
BAE78322; BAE78322; BAE78322.
GeneIDi948854.
KEGGiecj:JW4292.
eco:b4329.
PATRICi32124260. VBIEscCol129921_4473.

Organism-specific databases

EchoBASEiEB2456.
EcoGeneiEG12568. yjiG.

Phylogenomic databases

eggNOGiENOG4108P2H. Bacteria.
COG0700. LUCA.
HOGENOMiHOG000111645.
OMAiCVINALV.
OrthoDBiEOG6C0183.

Enzyme and pathway databases

BioCyciEcoCyc:G7926-MONOMER.
ECOL316407:JW4292-MONOMER.

Miscellaneous databases

PROiP0AEH8.

Family and domain databases

InterProiIPR011642. Gate_dom.
[Graphical view]
PfamiPF07670. Gate. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Purification and characterization of an isoaspartyl dipeptidase from Escherichia coli."
    Gary J.D., Clarke S.
    J. Biol. Chem. 270:4076-4087(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYJIG_ECOLI
AccessioniPrimary (citable) accession number: P0AEH8
Secondary accession number(s): P39378, Q2M5Y4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: January 20, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.