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Protein

Protein DcrB

Gene

dcrB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for phage C1 adsorption.

Enzyme and pathway databases

BioCyciEcoCyc:G7767-MONOMER.
ECOL316407:JW5682-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein DcrB
Gene namesi
Name:dcrB
Synonyms:yhhR
Ordered Locus Names:b3472, JW5682
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12218. dcrB.

Subcellular locationi

GO - Cellular componenti

  • periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 185166Protein DcrBPRO_0000021094Add
BLAST

Proteomic databases

EPDiP0AEE1.
PaxDbiP0AEE1.
PRIDEiP0AEE1.

2D gel databases

SWISS-2DPAGEP0AEE1.

Interactioni

Protein-protein interaction databases

BioGridi4262924. 129 interactions.
DIPiDIP-36187N.
IntActiP0AEE1. 9 interactions.
STRINGi511145.b3472.

Structurei

3D structure databases

ProteinModelPortaliP0AEE1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108W1V. Bacteria.
ENOG4111IIQ. LUCA.
HOGENOMiHOG000125708.
InParanoidiP0AEE1.
OMAiACDNSDT.
OrthoDBiEOG64N9Z9.

Family and domain databases

InterProiIPR014894. DcrB.
[Graphical view]
PfamiPF08786. DUF1795. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0AEE1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNLVKYVGI GLLVMGLAAC DDKDTNATAQ GSVAESNATG NPVNLLDGKL
60 70 80 90 100
SFSLPADMTD QSGKLGTQAN NMHVWSDATG QKAVIVIMGD DPKEDLAVLA
110 120 130 140 150
KRLEDQQRSR DPQLQVVTNK AIELKGHKMQ QLDSIISAKG QTAYSSVILG
160 170 180
NVGNQLLTMQ ITLPADDQQK AQTTAENIIN TLVIQ
Length:185
Mass (Da):19,787
Last modified:December 6, 2005 - v1
Checksum:i8412B6A4028750B2
GO

Sequence cautioni

The sequence AAB18447.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18447.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76497.2.
AP009048 Genomic DNA. Translation: BAE77821.1.
RefSeqiNP_417929.4. NC_000913.3.
WP_001245295.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76497; AAC76497; b3472.
BAE77821; BAE77821; BAE77821.
GeneIDi947983.
KEGGiecj:JW5682.
eco:b3472.
PATRICi32122388. VBIEscCol129921_3571.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00039 Genomic DNA. Translation: AAB18447.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76497.2.
AP009048 Genomic DNA. Translation: BAE77821.1.
RefSeqiNP_417929.4. NC_000913.3.
WP_001245295.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AEE1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262924. 129 interactions.
DIPiDIP-36187N.
IntActiP0AEE1. 9 interactions.
STRINGi511145.b3472.

2D gel databases

SWISS-2DPAGEP0AEE1.

Proteomic databases

EPDiP0AEE1.
PaxDbiP0AEE1.
PRIDEiP0AEE1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76497; AAC76497; b3472.
BAE77821; BAE77821; BAE77821.
GeneIDi947983.
KEGGiecj:JW5682.
eco:b3472.
PATRICi32122388. VBIEscCol129921_3571.

Organism-specific databases

EchoBASEiEB2132.
EcoGeneiEG12218. dcrB.

Phylogenomic databases

eggNOGiENOG4108W1V. Bacteria.
ENOG4111IIQ. LUCA.
HOGENOMiHOG000125708.
InParanoidiP0AEE1.
OMAiACDNSDT.
OrthoDBiEOG64N9Z9.

Enzyme and pathway databases

BioCyciEcoCyc:G7767-MONOMER.
ECOL316407:JW5682-MONOMER.

Miscellaneous databases

PROiP0AEE1.

Family and domain databases

InterProiIPR014894. DcrB.
[Graphical view]
PfamiPF08786. DUF1795. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes."
    Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.
    Nucleic Acids Res. 22:2576-2586(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Genetic control of the resistance to phage C1 of Escherichia coli K-12."
    Likhacheva N.A., Samsonov V.V., Samsonov V.V., Sineoky S.P.
    J. Bacteriol. 178:5309-5315(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: INVOLVEMENT IN PHAGE C1 ADSORPTION.

Entry informationi

Entry nameiDCRB_ECOLI
AccessioniPrimary (citable) accession number: P0AEE1
Secondary accession number(s): P37620, P76699, Q2M7D5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: March 16, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

May interact with SdaC for phage adsorption.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.