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Protein

RutC family protein YoaB

Gene

yoaB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • single-species biofilm formation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6993-MONOMER.
ECOL316407:JW5295-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
RutC family protein YoaB
Gene namesi
Name:yoaB
Ordered Locus Names:b1809, JW5295
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13514. yoaB.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 114114RutC family protein YoaBPRO_0000170326Add
BLAST

Proteomic databases

EPDiP0AEB7.
PaxDbiP0AEB7.

Interactioni

Protein-protein interaction databases

BioGridi4260342. 3 interactions.
DIPiDIP-47897N.
STRINGi511145.b1809.

Structurei

3D structure databases

ProteinModelPortaliP0AEB7.
SMRiP0AEB7. Positions 1-114.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RutC family.Curated

Phylogenomic databases

eggNOGiENOG4105M4H. Bacteria.
COG0251. LUCA.
HOGENOMiHOG000267214.
InParanoidiP0AEB7.
OMAiNEAWDAW.
PhylomeDBiP0AEB7.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR019897. RidA_CS.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.
PROSITEiPS01094. UPF0076. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AEB7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIVRIDAEA RWSDVVIHNN TLYYTGVPEN LDADAFEQTA NTLAQIDAVL
60 70 80 90 100
EKQGSNKSSI LDATIFLADK NDFAAMNKAW DAWVVAGHAP VRCTVQAGLM
110
NPKYKVEIKI VAAV
Length:114
Mass (Da):12,493
Last modified:December 6, 2005 - v1
Checksum:iCB276C49F32AB754
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74879.2.
AP009048 Genomic DNA. Translation: BAA15618.2.
PIRiA64942.
RefSeqiNP_416323.4. NC_000913.3.
WP_001295493.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74879; AAC74879; b1809.
BAA15618; BAA15618; BAA15618.
GeneIDi946357.
KEGGiecj:JW5295.
eco:b1809.
PATRICi32118935. VBIEscCol129921_1885.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74879.2.
AP009048 Genomic DNA. Translation: BAA15618.2.
PIRiA64942.
RefSeqiNP_416323.4. NC_000913.3.
WP_001295493.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AEB7.
SMRiP0AEB7. Positions 1-114.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260342. 3 interactions.
DIPiDIP-47897N.
STRINGi511145.b1809.

Proteomic databases

EPDiP0AEB7.
PaxDbiP0AEB7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74879; AAC74879; b1809.
BAA15618; BAA15618; BAA15618.
GeneIDi946357.
KEGGiecj:JW5295.
eco:b1809.
PATRICi32118935. VBIEscCol129921_1885.

Organism-specific databases

EchoBASEiEB3287.
EcoGeneiEG13514. yoaB.

Phylogenomic databases

eggNOGiENOG4105M4H. Bacteria.
COG0251. LUCA.
HOGENOMiHOG000267214.
InParanoidiP0AEB7.
OMAiNEAWDAW.
PhylomeDBiP0AEB7.

Enzyme and pathway databases

BioCyciEcoCyc:G6993-MONOMER.
ECOL316407:JW5295-MONOMER.

Miscellaneous databases

PROiP0AEB7.

Family and domain databases

Gene3Di3.30.1330.40. 1 hit.
InterProiIPR013813. Endoribo_LPSP/chorism_mut-like.
IPR019897. RidA_CS.
IPR006175. YjgF/YER057c/UK114.
[Graphical view]
PANTHERiPTHR11803. PTHR11803. 1 hit.
PfamiPF01042. Ribonuc_L-PSP. 1 hit.
[Graphical view]
SUPFAMiSSF55298. SSF55298. 1 hit.
PROSITEiPS01094. UPF0076. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYOAB_ECOLI
AccessioniPrimary (citable) accession number: P0AEB7
Secondary accession number(s): P76258
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: September 7, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.