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Protein

L-arabinose transport system permease protein AraH

Gene

araH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:ARAH-MONOMER.
ECOL316407:JW1887-MONOMER.
MetaCyc:ARAH-MONOMER.
RETL1328306-WGS:GSTH-3768-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.2. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
L-arabinose transport system permease protein AraH
Gene namesi
Name:araH
Ordered Locus Names:b4460, JW1887
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10059. araH.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei29 – 4921HelicalSequence analysisAdd
BLAST
Transmembranei53 – 7321HelicalSequence analysisAdd
BLAST
Transmembranei79 – 9921HelicalSequence analysisAdd
BLAST
Transmembranei104 – 12421HelicalSequence analysisAdd
BLAST
Transmembranei129 – 14921HelicalSequence analysisAdd
BLAST
Transmembranei171 – 19121HelicalSequence analysisAdd
BLAST
Transmembranei220 – 24021HelicalSequence analysisAdd
BLAST
Transmembranei249 – 26921HelicalSequence analysisAdd
BLAST
Transmembranei276 – 29621HelicalSequence analysisAdd
BLAST
Transmembranei297 – 31721HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: EcoCyc
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 328328L-arabinose transport system permease protein AraHPRO_0000059951Add
BLAST

Proteomic databases

PaxDbiP0AE26.

Interactioni

Protein-protein interaction databases

BioGridi4262240. 16 interactions.
STRINGi511145.b4460.

Structurei

3D structure databases

ProteinModelPortaliP0AE26.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CNN. Bacteria.
COG1172. LUCA.
HOGENOMiHOG000212232.
InParanoidiP0AE26.
KOiK10538.
OMAiWIGVFAG.
OrthoDBiEOG61P6T8.
PhylomeDBiP0AE26.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AE26-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSVSTSGSG APKSSFSFGR IWDQYGMLVV FAVLFIACAI FVPNFATFIN
60 70 80 90 100
MKGLGLAISM SGMVACGMLF CLASGDFDLS VASVIACAGV TTAVVINLTE
110 120 130 140 150
SLWIGVAAGL LLGVLCGLVN GFVIAKLKIN ALITTLATMQ IVRGLAYIIS
160 170 180 190 200
DGKAVGIEDE SFFALGYANW FGLPAPIWLT VACLIIFGLL LNKTTFGRNT
210 220 230 240 250
LAIGGNEEAA RLAGVPVVRT KIIIFVLSGL VSAIAGIILA SRMTSGQPMT
260 270 280 290 300
SIGYELIVIS ACVLGGVSLK GGIGKISYVV AGILILGTVE NAMNLLNISP
310 320
FAQYVVRGLI LLAAVIFDRY KQKAKRTV
Length:328
Mass (Da):34,211
Last modified:July 10, 2007 - v2
Checksum:i72B778D741FB6938
GO

Sequence cautioni

The sequence BAA15719.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAA29478.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAA48911.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06091 Genomic DNA. Translation: CAA29478.1. Different initiation.
U00096 Genomic DNA. Translation: AAT48138.2.
AP009048 Genomic DNA. Translation: BAA15719.1. Different initiation.
X69160 Genomic DNA. Translation: CAA48911.1. Different initiation.
PIRiS01075.
RefSeqiWP_000100205.1. NZ_LN832404.1.
YP_026162.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48138; AAT48138; b4460.
BAA15719; BAA15719; BAA15719.
GeneIDi948923.
KEGGiecj:JW1887.
eco:b4460.
PATRICi32119123. VBIEscCol129921_1979.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X06091 Genomic DNA. Translation: CAA29478.1. Different initiation.
U00096 Genomic DNA. Translation: AAT48138.2.
AP009048 Genomic DNA. Translation: BAA15719.1. Different initiation.
X69160 Genomic DNA. Translation: CAA48911.1. Different initiation.
PIRiS01075.
RefSeqiWP_000100205.1. NZ_LN832404.1.
YP_026162.2. NC_000913.3.

3D structure databases

ProteinModelPortaliP0AE26.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262240. 16 interactions.
STRINGi511145.b4460.

Protein family/group databases

TCDBi3.A.1.2.2. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP0AE26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48138; AAT48138; b4460.
BAA15719; BAA15719; BAA15719.
GeneIDi948923.
KEGGiecj:JW1887.
eco:b4460.
PATRICi32119123. VBIEscCol129921_1979.

Organism-specific databases

EchoBASEiEB0057.
EcoGeneiEG10059. araH.

Phylogenomic databases

eggNOGiENOG4105CNN. Bacteria.
COG1172. LUCA.
HOGENOMiHOG000212232.
InParanoidiP0AE26.
KOiK10538.
OMAiWIGVFAG.
OrthoDBiEOG61P6T8.
PhylomeDBiP0AE26.

Enzyme and pathway databases

BioCyciEcoCyc:ARAH-MONOMER.
ECOL316407:JW1887-MONOMER.
MetaCyc:ARAH-MONOMER.
RETL1328306-WGS:GSTH-3768-MONOMER.

Miscellaneous databases

PROiP0AE26.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "High-affinity L-arabinose transport operon. Nucleotide sequence and analysis of gene products."
    Scripture J.B., Voelker C., Miller S., O'Donnell R.T., Polgar L., Rade J., Horazdovsky B.F., Hogg R.W.
    J. Mol. Biol. 197:37-46(1987) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: BEK 180.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. Cited for: SEQUENCE REVISION.
  5. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  6. "Analysis of the otsBA operon for osmoregulatory trehalose synthesis in Escherichia coli and homology of the OtsA and OtsB proteins to the yeast trehalose-6-phosphate synthase/phosphatase complex."
    Kaasen I., McDougall J., Stroem A.R.
    Gene 145:9-15(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 161-328.
    Strain: K12 / CSH7.
  7. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiARAH_ECOLI
AccessioniPrimary (citable) accession number: P0AE26
Secondary accession number(s): P08532, P76304, P76305
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: July 10, 2007
Last modified: January 20, 2016
This is version 86 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.