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Protein

Protein YhfA

Gene

yhfA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11182-MONOMER.
ECOL316407:JW3319-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YhfA
Gene namesi
Name:yhfA
Ordered Locus Names:b3356, JW3319
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11182. yhfA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 134134Protein YhfAPRO_0000169516Add
BLAST

Proteomic databases

EPDiP0ADX1.
PaxDbiP0ADX1.
PRIDEiP0ADX1.

Interactioni

Protein-protein interaction databases

BioGridi4262926. 10 interactions.
DIPiDIP-48201N.
STRINGi511145.b3356.

Structurei

Secondary structure

1
134
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 96Combined sources
Beta strandi12 – 165Combined sources
Beta strandi22 – 265Combined sources
Turni27 – 304Combined sources
Beta strandi31 – 333Combined sources
Helixi36 – 5823Combined sources
Beta strandi63 – 7412Combined sources
Beta strandi82 – 9514Combined sources
Helixi98 – 11013Combined sources
Helixi114 – 1196Combined sources
Turni120 – 1223Combined sources
Beta strandi123 – 13311Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ML8X-ray2.60A1-134[»]
ProteinModelPortaliP0ADX1.
SMRiP0ADX1. Positions 1-134.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADX1.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108UKZ. Bacteria.
COG1765. LUCA.
HOGENOMiHOG000256281.
InParanoidiP0ADX1.
KOiK07397.
OMAiGPRPMEM.
OrthoDBiEOG6R2H4J.
PhylomeDBiP0ADX1.

Family and domain databases

Gene3Di3.30.300.20. 1 hit.
InterProiIPR015946. KH_dom-like_a/b.
IPR003718. OsmC/Ohr_fam.
[Graphical view]
PfamiPF02566. OsmC. 1 hit.
[Graphical view]
SUPFAMiSSF82784. SSF82784. 1 hit.

Sequencei

Sequence statusi: Complete.

P0ADX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQARVKWVEG LTFLGESASG HQILMDGNSG DKAPSPMEMV LMAAGGCSAI
60 70 80 90 100
DVVSILQKGR QDVVDCEVKL TSERREEAPR LFTHINLHFI VTGRDLKDAA
110 120 130
VARAVDLSAE KYCSVALMLE KAVNITHSYE VVAA
Length:134
Mass (Da):14,517
Last modified:December 6, 2005 - v1
Checksum:iCF55FD536E0EDE4E
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti77 – 793EAP → ADT in CAA43921 (PubMed:1756168).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61919 Genomic DNA. Translation: CAA43921.1.
U18997 Genomic DNA. Translation: AAA58153.1.
U00096 Genomic DNA. Translation: AAC76381.1.
AP009048 Genomic DNA. Translation: BAE77934.1.
PIRiG65129.
RefSeqiNP_417815.1. NC_000913.3.
WP_001148908.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76381; AAC76381; b3356.
BAE77934; BAE77934; BAE77934.
GeneIDi947860.
KEGGiecj:JW3319.
eco:b3356.
PATRICi32122146. VBIEscCol129921_3450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61919 Genomic DNA. Translation: CAA43921.1.
U18997 Genomic DNA. Translation: AAA58153.1.
U00096 Genomic DNA. Translation: AAC76381.1.
AP009048 Genomic DNA. Translation: BAE77934.1.
PIRiG65129.
RefSeqiNP_417815.1. NC_000913.3.
WP_001148908.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ML8X-ray2.60A1-134[»]
ProteinModelPortaliP0ADX1.
SMRiP0ADX1. Positions 1-134.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262926. 10 interactions.
DIPiDIP-48201N.
STRINGi511145.b3356.

Proteomic databases

EPDiP0ADX1.
PaxDbiP0ADX1.
PRIDEiP0ADX1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76381; AAC76381; b3356.
BAE77934; BAE77934; BAE77934.
GeneIDi947860.
KEGGiecj:JW3319.
eco:b3356.
PATRICi32122146. VBIEscCol129921_3450.

Organism-specific databases

EchoBASEiEB1169.
EcoGeneiEG11182. yhfA.

Phylogenomic databases

eggNOGiENOG4108UKZ. Bacteria.
COG1765. LUCA.
HOGENOMiHOG000256281.
InParanoidiP0ADX1.
KOiK07397.
OMAiGPRPMEM.
OrthoDBiEOG6R2H4J.
PhylomeDBiP0ADX1.

Enzyme and pathway databases

BioCyciEcoCyc:EG11182-MONOMER.
ECOL316407:JW3319-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ADX1.
PROiP0ADX1.

Family and domain databases

Gene3Di3.30.300.20. 1 hit.
InterProiIPR015946. KH_dom-like_a/b.
IPR003718. OsmC/Ohr_fam.
[Graphical view]
PfamiPF02566. OsmC. 1 hit.
[Graphical view]
SUPFAMiSSF82784. SSF82784. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The nucleotide sequence of the Escherichia coli crp divergent RNA and an overlapping ORF."
    Bhasin R., Freundlich M.
    Biochim. Biophys. Acta 1129:109-111(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Midwest center for structural genomics (MCSG)
    Submitted (JAN-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS).

Entry informationi

Entry nameiYHFA_ECOLI
AccessioniPrimary (citable) accession number: P0ADX1
Secondary accession number(s): P24246, Q2M722
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: July 6, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.