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Protein

Protein YgiW

Gene

ygiW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to cadmium ion Source: EcoCyc
  • cellular response to hydrogen peroxide Source: EcoCyc
  • single-species biofilm formation on inanimate substrate Source: EcoCyc

Enzyme and pathway databases

BioCyciEcoCyc:G7574-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YgiW
Gene namesi
Name:ygiW
Ordered Locus Names:b3024, JW2992
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13025 ygiW

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 201 PublicationAdd BLAST20
ChainiPRO_000001390221 – 130Protein YgiWAdd BLAST110

Proteomic databases

PaxDbiP0ADU5
PRIDEiP0ADU5

Interactioni

Protein-protein interaction databases

BioGridi4259249, 15 interactors
DIPiDIP-47914N
IntActiP0ADU5, 2 interactors
STRINGi316385.ECDH10B_3198

Structurei

Secondary structure

1130
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi49 – 52Combined sources4
Beta strandi57 – 72Combined sources16
Beta strandi75 – 80Combined sources6
Beta strandi83 – 88Combined sources6
Helixi91 – 93Combined sources3
Beta strandi103 – 114Combined sources12
Beta strandi117 – 128Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NNXX-ray1.45A22-130[»]
ProteinModelPortaliP0ADU5
SMRiP0ADU5
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADU5

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1709.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105H4F Bacteria
COG3111 LUCA
HOGENOMiHOG000216776
InParanoidiP0ADU5
OMAiKHLMSRE
PhylomeDBiP0ADU5

Family and domain databases

Gene3Di2.40.50.200, 1 hit
InterProiView protein in InterPro
IPR036700 BOBF_sf
IPR005220 BOF
IPR016052 Phage_933W_L0136
PfamiView protein in Pfam
PF04076 BOF, 1 hit
SUPFAMiSSF101756 SSF101756, 1 hit
TIGRFAMsiTIGR00156 TIGR00156, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADU5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKFAAVIAV MALCSAPVMA AEQGGFSGPS ATQSQAGGFQ GPNGSVTTVE
60 70 80 90 100
SAKSLRDDTW VTLRGNIVER ISDDLYVFKD ASGTINVDID HKRWNGVTVT
110 120 130
PKDTVEIQGE VDKDWNSVEI DVKQIRKVNP
Length:130
Mass (Da):14,011
Last modified:December 6, 2005 - v1
Checksum:iEEF2F415058CA428
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA Translation: AAA69192.1
U00096 Genomic DNA Translation: AAC76060.1
AP009048 Genomic DNA Translation: BAE77080.1
PIRiF65089
RefSeqiNP_417496.1, NC_000913.3
WP_000712658.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76060; AAC76060; b3024
BAE77080; BAE77080; BAE77080
GeneIDi946051
KEGGiecj:JW2992
eco:b3024
PATRICifig|511145.12.peg.3117

Similar proteinsi

Entry informationi

Entry nameiYGIW_ECOLI
AccessioniPrimary (citable) accession number: P0ADU5
Secondary accession number(s): P52083, Q2M9H6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: March 28, 2018
This is version 102 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health