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Protein

Protein YgiW

Gene

ygiW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to cadmium ion Source: EcoCyc
  • cellular response to hydrogen peroxide Source: EcoCyc
  • single-species biofilm formation on inanimate substrate Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7574-MONOMER.
ECOL316407:JW2992-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YgiW
Gene namesi
Name:ygiW
Ordered Locus Names:b3024, JW2992
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13025. ygiW.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 20201 PublicationAdd
BLAST
Chaini21 – 130110Protein YgiWPRO_0000013902Add
BLAST

Proteomic databases

EPDiP0ADU5.
PaxDbiP0ADU5.
PRIDEiP0ADU5.

Interactioni

Protein-protein interaction databases

BioGridi4259249. 11 interactions.
DIPiDIP-47914N.
IntActiP0ADU5. 2 interactions.
MINTiMINT-1219523.
STRINGi511145.b3024.

Structurei

Secondary structure

1
130
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi49 – 524Combined sources
Beta strandi57 – 7216Combined sources
Beta strandi75 – 806Combined sources
Beta strandi83 – 886Combined sources
Helixi91 – 933Combined sources
Beta strandi103 – 11412Combined sources
Beta strandi117 – 12812Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NNXX-ray1.45A22-130[»]
ProteinModelPortaliP0ADU5.
SMRiP0ADU5. Positions 37-128.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADU5.

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1709.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105H4F. Bacteria.
COG3111. LUCA.
HOGENOMiHOG000216776.
InParanoidiP0ADU5.
OMAiRWDGQTI.
OrthoDBiEOG6WQD91.
PhylomeDBiP0ADU5.

Family and domain databases

Gene3Di2.40.50.200. 1 hit.
InterProiIPR005220. BOF.
IPR016052. Phage_933W_L0136.
[Graphical view]
PfamiPF04076. BOF. 1 hit.
[Graphical view]
SUPFAMiSSF101756. SSF101756. 1 hit.
TIGRFAMsiTIGR00156. TIGR00156. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADU5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKFAAVIAV MALCSAPVMA AEQGGFSGPS ATQSQAGGFQ GPNGSVTTVE
60 70 80 90 100
SAKSLRDDTW VTLRGNIVER ISDDLYVFKD ASGTINVDID HKRWNGVTVT
110 120 130
PKDTVEIQGE VDKDWNSVEI DVKQIRKVNP
Length:130
Mass (Da):14,011
Last modified:December 6, 2005 - v1
Checksum:iEEF2F415058CA428
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69192.1.
U00096 Genomic DNA. Translation: AAC76060.1.
AP009048 Genomic DNA. Translation: BAE77080.1.
PIRiF65089.
RefSeqiNP_417496.1. NC_000913.3.
WP_000712658.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76060; AAC76060; b3024.
BAE77080; BAE77080; BAE77080.
GeneIDi946051.
KEGGiecj:JW2992.
eco:b3024.
PATRICi32121460. VBIEscCol129921_3117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69192.1.
U00096 Genomic DNA. Translation: AAC76060.1.
AP009048 Genomic DNA. Translation: BAE77080.1.
PIRiF65089.
RefSeqiNP_417496.1. NC_000913.3.
WP_000712658.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NNXX-ray1.45A22-130[»]
ProteinModelPortaliP0ADU5.
SMRiP0ADU5. Positions 37-128.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259249. 11 interactions.
DIPiDIP-47914N.
IntActiP0ADU5. 2 interactions.
MINTiMINT-1219523.
STRINGi511145.b3024.

Proteomic databases

EPDiP0ADU5.
PaxDbiP0ADU5.
PRIDEiP0ADU5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76060; AAC76060; b3024.
BAE77080; BAE77080; BAE77080.
GeneIDi946051.
KEGGiecj:JW2992.
eco:b3024.
PATRICi32121460. VBIEscCol129921_3117.

Organism-specific databases

EchoBASEiEB2843.
EcoGeneiEG13025. ygiW.

Phylogenomic databases

eggNOGiENOG4105H4F. Bacteria.
COG3111. LUCA.
HOGENOMiHOG000216776.
InParanoidiP0ADU5.
OMAiRWDGQTI.
OrthoDBiEOG6WQD91.
PhylomeDBiP0ADU5.

Enzyme and pathway databases

BioCyciEcoCyc:G7574-MONOMER.
ECOL316407:JW2992-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ADU5.
PROiP0ADU5.

Family and domain databases

Gene3Di2.40.50.200. 1 hit.
InterProiIPR005220. BOF.
IPR016052. Phage_933W_L0136.
[Graphical view]
PfamiPF04076. BOF. 1 hit.
[Graphical view]
SUPFAMiSSF101756. SSF101756. 1 hit.
TIGRFAMsiTIGR00156. TIGR00156. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 21-32.
    Strain: K12 / EMG2.

Entry informationi

Entry nameiYGIW_ECOLI
AccessioniPrimary (citable) accession number: P0ADU5
Secondary accession number(s): P52083, Q2M9H6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: May 11, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.