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Protein

Probable quinol monooxygenase YgiN

Gene

ygiN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Can oxidize menadiol to menadione.1 Publication

GO - Molecular functioni

  • oxidoreductase activity Source: EcoCyc

GO - Biological processi

  • response to acidic pH Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:EG12657-MONOMER.
ECOL316407:JW2997-MONOMER.
MetaCyc:EG12657-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable quinol monooxygenase YgiN (EC:1.-.-.-)
Short name:
QuMo
Gene namesi
Name:ygiN
Ordered Locus Names:b3029, JW2997
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12657. ygiN.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001694081 – 104Probable quinol monooxygenase YgiNAdd BLAST104

Proteomic databases

EPDiP0ADU2.
PaxDbiP0ADU2.
PRIDEiP0ADU2.

2D gel databases

SWISS-2DPAGEP0ADU2.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

BioGridi4262392. 5 interactors.
IntActiP0ADU2. 2 interactors.
STRINGi511145.b3029.

Structurei

Secondary structure

1104
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 10Combined sources9
Beta strandi12 – 15Combined sources4
Helixi16 – 33Combined sources18
Beta strandi37 – 43Combined sources7
Beta strandi59 – 67Combined sources9
Helixi69 – 76Combined sources8
Helixi79 – 88Combined sources10
Turni89 – 91Combined sources3
Beta strandi92 – 100Combined sources9

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1R6YX-ray2.20A1-104[»]
1TUVX-ray1.70A1-104[»]
ProteinModelPortaliP0ADU2.
SMRiP0ADU2.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADU2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 100ABMAdd BLAST99

Sequence similaritiesi

Contains 1 ABM domain.Curated

Phylogenomic databases

eggNOGiENOG4105VRH. Bacteria.
COG1359. LUCA.
HOGENOMiHOG000145619.
InParanoidiP0ADU2.
OMAiVLQEEGC.

Family and domain databases

InterProiIPR007138. ABM_dom.
IPR011008. Dimeric_a/b-barrel.
[Graphical view]
PfamiPF03992. ABM. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
PROSITEiPS51725. ABM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADU2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTVIAEIRT RPGQHHRQAV LDQFAKIVPT VLKEEGCHGY APMVDCAAGV
60 70 80 90 100
SFQSMAPDSI VMIEQWESIA HLEAHLQTPH MKAYSEAVKG DVLEMNIRIL

QPGI
Length:104
Mass (Da):11,532
Last modified:December 6, 2005 - v1
Checksum:i46E7B5A11ADED1EA
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti4Missing AA sequence (PubMed:9868784).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18656 Genomic DNA. No translation available.
U28377 Genomic DNA. Translation: AAA69197.1.
U00096 Genomic DNA. Translation: AAC76065.1.
AP009048 Genomic DNA. Translation: BAE77085.1.
PIRiC65090.
RefSeqiNP_417501.1. NC_000913.3.
WP_000958598.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76065; AAC76065; b3029.
BAE77085; BAE77085; BAE77085.
GeneIDi947506.
KEGGiecj:JW2997.
eco:b3029.
PATRICi32121468. VBIEscCol129921_3121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18656 Genomic DNA. No translation available.
U28377 Genomic DNA. Translation: AAA69197.1.
U00096 Genomic DNA. Translation: AAC76065.1.
AP009048 Genomic DNA. Translation: BAE77085.1.
PIRiC65090.
RefSeqiNP_417501.1. NC_000913.3.
WP_000958598.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1R6YX-ray2.20A1-104[»]
1TUVX-ray1.70A1-104[»]
ProteinModelPortaliP0ADU2.
SMRiP0ADU2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262392. 5 interactors.
IntActiP0ADU2. 2 interactors.
STRINGi511145.b3029.

2D gel databases

SWISS-2DPAGEP0ADU2.

Proteomic databases

EPDiP0ADU2.
PaxDbiP0ADU2.
PRIDEiP0ADU2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76065; AAC76065; b3029.
BAE77085; BAE77085; BAE77085.
GeneIDi947506.
KEGGiecj:JW2997.
eco:b3029.
PATRICi32121468. VBIEscCol129921_3121.

Organism-specific databases

EchoBASEiEB2525.
EcoGeneiEG12657. ygiN.

Phylogenomic databases

eggNOGiENOG4105VRH. Bacteria.
COG1359. LUCA.
HOGENOMiHOG000145619.
InParanoidiP0ADU2.
OMAiVLQEEGC.

Enzyme and pathway databases

BioCyciEcoCyc:EG12657-MONOMER.
ECOL316407:JW2997-MONOMER.
MetaCyc:EG12657-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ADU2.
PROiP0ADU2.

Family and domain databases

InterProiIPR007138. ABM_dom.
IPR011008. Dimeric_a/b-barrel.
[Graphical view]
PfamiPF03992. ABM. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
PROSITEiPS51725. ABM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGIN_ECOLI
AccessioniPrimary (citable) accession number: P0ADU2
Secondary accession number(s): P40718, Q2M9H1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.