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Protein

Uncharacterized protein YgiM

Gene

ygiM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12434-MONOMER.
ECOL316407:JW3027-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YgiM
Gene namesi
Name:ygiM
Ordered Locus Names:b3055, JW3027
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12434. ygiM.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei169 – 19123HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • cytosol Source: EcoCyc
  • integral component of plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 206184Uncharacterized protein YgiMPRO_0000013900Add
BLAST

Proteomic databases

EPDiP0ADT8.
PaxDbiP0ADT8.
PRIDEiP0ADT8.

Interactioni

Protein-protein interaction databases

BioGridi4259254. 11 interactions.
IntActiP0ADT8. 3 interactions.
STRINGi511145.b3055.

Structurei

3D structure databases

ProteinModelPortaliP0ADT8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini23 – 8967SH3bPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 SH3b domain.PROSITE-ProRule annotation
To H.influenzae HI_1605.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4106MWK. Bacteria.
COG3103. LUCA.
HOGENOMiHOG000272218.
InParanoidiP0ADT8.
KOiK07184.
OMAiHKGREGW.

Family and domain databases

InterProiIPR003646. SH3-like_bac-type.
IPR016476. SH3_dom_pro.
[Graphical view]
PfamiPF08239. SH3_3. 1 hit.
[Graphical view]
PIRSFiPIRSF006158. UCP006158_SH3. 1 hit.
SMARTiSM00287. SH3b. 1 hit.
[Graphical view]
TIGRFAMsiTIGR04211. SH3_and_anchor. 1 hit.
PROSITEiPS51781. SH3B. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADT8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKLRLIGLT LLALSATAVS HAEETRYVSD ELNTWVRSGP GDHYRLVGTV
60 70 80 90 100
NAGEEVTLLQ TDANTNYAQV KDSSGRTAWI PLKQLSTEPS LRSRVPDLEN
110 120 130 140 150
QVKTLTDKLT NIDNTWNQRT AEMQQKVAQS DSVINGLKEE NQKLKNELIV
160 170 180 190 200
AQKKVDAASV QLDDKQRTII MQWFMYGGGV LGLGLLLGLV LPHLIPSRKR

KDRWMN
Length:206
Mass (Da):23,076
Last modified:December 6, 2005 - v1
Checksum:iE3540A43D7DD939D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28379 Genomic DNA. Translation: AAA89135.1.
U00096 Genomic DNA. Translation: AAC76091.1.
AP009048 Genomic DNA. Translation: BAE77106.1.
M12788 Genomic DNA. No translation available.
PIRiE65093.
RefSeqiNP_417527.1. NC_000913.3.
WP_001125331.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76091; AAC76091; b3055.
BAE77106; BAE77106; BAE77106.
GeneIDi947555.
KEGGiecj:JW3027.
eco:b3055.
PATRICi32121522. VBIEscCol129921_3148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28379 Genomic DNA. Translation: AAA89135.1.
U00096 Genomic DNA. Translation: AAC76091.1.
AP009048 Genomic DNA. Translation: BAE77106.1.
M12788 Genomic DNA. No translation available.
PIRiE65093.
RefSeqiNP_417527.1. NC_000913.3.
WP_001125331.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADT8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259254. 11 interactions.
IntActiP0ADT8. 3 interactions.
STRINGi511145.b3055.

Proteomic databases

EPDiP0ADT8.
PaxDbiP0ADT8.
PRIDEiP0ADT8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76091; AAC76091; b3055.
BAE77106; BAE77106; BAE77106.
GeneIDi947555.
KEGGiecj:JW3027.
eco:b3055.
PATRICi32121522. VBIEscCol129921_3148.

Organism-specific databases

EchoBASEiEB2330.
EcoGeneiEG12434. ygiM.

Phylogenomic databases

eggNOGiENOG4106MWK. Bacteria.
COG3103. LUCA.
HOGENOMiHOG000272218.
InParanoidiP0ADT8.
KOiK07184.
OMAiHKGREGW.

Enzyme and pathway databases

BioCyciEcoCyc:EG12434-MONOMER.
ECOL316407:JW3027-MONOMER.

Miscellaneous databases

PROiP0ADT8.

Family and domain databases

InterProiIPR003646. SH3-like_bac-type.
IPR016476. SH3_dom_pro.
[Graphical view]
PfamiPF08239. SH3_3. 1 hit.
[Graphical view]
PIRSFiPIRSF006158. UCP006158_SH3. 1 hit.
SMARTiSM00287. SH3b. 1 hit.
[Graphical view]
TIGRFAMsiTIGR04211. SH3_and_anchor. 1 hit.
PROSITEiPS51781. SH3B. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGIM_ECOLI
AccessioniPrimary (citable) accession number: P0ADT8
Secondary accession number(s): P39202, Q2M9F0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: September 7, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.