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Protein

UPF0441 protein YgiB

Gene

ygiB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • single-species biofilm formation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11164-MONOMER.
ECOL316407:JW5927-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0441 protein YgiB
Gene namesi
Name:ygiB
Ordered Locus Names:b3037, JW5927
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11164. ygiB.

Subcellular locationi

GO - Cellular componenti

  • cell outer membrane Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 223223UPF0441 protein YgiBPRO_0000169398Add
BLAST

Proteomic databases

PaxDbiP0ADT2.

Interactioni

Protein-protein interaction databases

BioGridi4261746. 13 interactions.
STRINGi511145.b3037.

Structurei

3D structure databases

ProteinModelPortaliP0ADT2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0441 family.Curated

Phylogenomic databases

eggNOGiENOG4105F1G. Bacteria.
COG5463. LUCA.
HOGENOMiHOG000140314.
OMAiCEQSDET.

Family and domain databases

HAMAPiMF_01188. UPF0441. 1 hit.
InterProiIPR009576. Biofilm_formation_YgiB.
[Graphical view]
PfamiPF06693. DUF1190. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADT2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRTKSIRHA SFRKNWSARH LTPVALAVAT VFMLAGCEKS DETVSLYQNA
60 70 80 90 100
DDCSAANPGK SAECTTAYNN ALKEAERTAP KYATREDCVA EFGEGQCQQA
110 120 130 140 150
PAQAGMAPEN QAQAQQSSGS FWMPLMAGYM MGRLMGGGAG FAQQPLFSSK
160 170 180 190 200
NPASPAYGKY TDATGKNYGA AQPGRTMTVP KTAMAPKPAT TTTVTRGGFG
210 220
ESVAKQSTMQ RSATGTSSRS MGG
Length:223
Mass (Da):23,479
Last modified:July 10, 2007 - v2
Checksum:i5A0741308437984C
GO

Sequence cautioni

The sequence AAA69205 differs from that shown. Reason: Erroneous initiation. Curated
The sequence AAA71875 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAE77093 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M77129 Genomic DNA. Translation: AAA71875.1. Different initiation.
U28377 Genomic DNA. Translation: AAA69205.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76073.3.
AP009048 Genomic DNA. Translation: BAE77093.1. Different initiation.
PIRiS22360.
RefSeqiNP_417509.3. NC_000913.3.
WP_000831543.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76073; AAC76073; b3037.
BAE77093; BAE77093; BAE77093.
GeneIDi945086.
KEGGiecj:JW5927.
eco:b3037.
PATRICi32121484. VBIEscCol129921_3129.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M77129 Genomic DNA. Translation: AAA71875.1. Different initiation.
U28377 Genomic DNA. Translation: AAA69205.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76073.3.
AP009048 Genomic DNA. Translation: BAE77093.1. Different initiation.
PIRiS22360.
RefSeqiNP_417509.3. NC_000913.3.
WP_000831543.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADT2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261746. 13 interactions.
STRINGi511145.b3037.

Proteomic databases

PaxDbiP0ADT2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76073; AAC76073; b3037.
BAE77093; BAE77093; BAE77093.
GeneIDi945086.
KEGGiecj:JW5927.
eco:b3037.
PATRICi32121484. VBIEscCol129921_3129.

Organism-specific databases

EchoBASEiEB1152.
EcoGeneiEG11164. ygiB.

Phylogenomic databases

eggNOGiENOG4105F1G. Bacteria.
COG5463. LUCA.
HOGENOMiHOG000140314.
OMAiCEQSDET.

Enzyme and pathway databases

BioCyciEcoCyc:EG11164-MONOMER.
ECOL316407:JW5927-MONOMER.

Miscellaneous databases

PROiP0ADT2.

Family and domain databases

HAMAPiMF_01188. UPF0441. 1 hit.
InterProiIPR009576. Biofilm_formation_YgiB.
[Graphical view]
PfamiPF06693. DUF1190. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGIB_ECOLI
AccessioniPrimary (citable) accession number: P0ADT2
Secondary accession number(s): P24195, Q2M9G3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: July 10, 2007
Last modified: September 7, 2016
This is version 67 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.