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Protein

LOG family protein YgdH

Gene

ygdH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG12373-MONOMER.
ECOL316407:JW2766-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
LOG family protein YgdH
Gene namesi
Name:ygdH
Ordered Locus Names:b2795, JW2766
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12373. ygdH.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 454454LOG family protein YgdHPRO_0000169334Add
BLAST

Proteomic databases

PaxDbiP0ADR8.
PRIDEiP0ADR8.

Interactioni

Protein-protein interaction databases

BioGridi4261305. 16 interactions.
DIPiDIP-47955N.
IntActiP0ADR8. 4 interactions.
MINTiMINT-1293384.
STRINGi511145.b2795.

Structurei

3D structure databases

ProteinModelPortaliP0ADR8.
SMRiP0ADR8. Positions 1-452.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the LOG family.Curated

Phylogenomic databases

eggNOGiENOG4105EWT. Bacteria.
COG1611. LUCA.
HOGENOMiHOG000273722.
InParanoidiP0ADR8.
KOiK06966.
OMAiEYKYTKK.

Family and domain databases

Gene3Di3.30.1850.10. 1 hit.
InterProiIPR021826. DUF3412.
IPR027820. DUF4478.
IPR031100. LOG_fam.
[Graphical view]
PfamiPF11892. DUF3412. 1 hit.
PF14793. DUF4478. 1 hit.
PF03641. Lysine_decarbox. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADR8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MITHISPLGS MDMLSQLEVD MLKRTASSDL YQLFRNCSLA VLNSGSLTDN
60 70 80 90 100
SKELLSRFEN FDINVLRRER GVKLELINPP EEAFVDGRII RALQANLFAV
110 120 130 140 150
LRDILFVYGQ IHNTVRFPNL NLDNSVHITN LVFSILRNAR ALHVGEAPNM
160 170 180 190 200
VVCWGGHSIN ENEYLYARRV GNQLGLRELN ICTGCGPGAM EAPMKGAAVG
210 220 230 240 250
HAQQRYKDSR FIGMTEPSII AAEPPNPLVN ELIIMPDIEK RLEAFVRIAH
260 270 280 290 300
GIIIFPGGVG TAEELLYLLG ILMNPANKDQ VLPLILTGPK ESADYFRVLD
310 320 330 340 350
EFVVHTLGEN ARRHYRIIID DAAEVARQMK KSMPLVKENR RDTGDAYSFN
360 370 380 390 400
WSMRIAPDLQ MPFEPSHENM ANLKLYPDQP VEVLAADLRR AFSGIVAGNV
410 420 430 440 450
KEVGIRAIEE FGPYKINGDK EIMRRMDDLL QGFVAQHRMK LPGSAYIPCY

EICT
Length:454
Mass (Da):50,972
Last modified:December 6, 2005 - v1
Checksum:i39068DCC61DD1CF6
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti389 – 3891R → A in U01233 (Ref. 3) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA. Translation: AAB40445.1.
U00096 Genomic DNA. Translation: AAC75837.1.
AP009048 Genomic DNA. Translation: BAE76867.1.
U01233 Genomic DNA. No translation available.
PIRiG65061.
RefSeqiNP_417275.1. NC_000913.3.
WP_000627995.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75837; AAC75837; b2795.
BAE76867; BAE76867; BAE76867.
GeneIDi947266.
KEGGiecj:JW2766.
eco:b2795.
PATRICi32121006. VBIEscCol129921_2895.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA. Translation: AAB40445.1.
U00096 Genomic DNA. Translation: AAC75837.1.
AP009048 Genomic DNA. Translation: BAE76867.1.
U01233 Genomic DNA. No translation available.
PIRiG65061.
RefSeqiNP_417275.1. NC_000913.3.
WP_000627995.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADR8.
SMRiP0ADR8. Positions 1-452.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261305. 16 interactions.
DIPiDIP-47955N.
IntActiP0ADR8. 4 interactions.
MINTiMINT-1293384.
STRINGi511145.b2795.

Proteomic databases

PaxDbiP0ADR8.
PRIDEiP0ADR8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75837; AAC75837; b2795.
BAE76867; BAE76867; BAE76867.
GeneIDi947266.
KEGGiecj:JW2766.
eco:b2795.
PATRICi32121006. VBIEscCol129921_2895.

Organism-specific databases

EchoBASEiEB2276.
EcoGeneiEG12373. ygdH.

Phylogenomic databases

eggNOGiENOG4105EWT. Bacteria.
COG1611. LUCA.
HOGENOMiHOG000273722.
InParanoidiP0ADR8.
KOiK06966.
OMAiEYKYTKK.

Enzyme and pathway databases

BioCyciEcoCyc:EG12373-MONOMER.
ECOL316407:JW2766-MONOMER.

Miscellaneous databases

PROiP0ADR8.

Family and domain databases

Gene3Di3.30.1850.10. 1 hit.
InterProiIPR021826. DUF3412.
IPR027820. DUF4478.
IPR031100. LOG_fam.
[Graphical view]
PfamiPF11892. DUF3412. 1 hit.
PF14793. DUF4478. 1 hit.
PF03641. Lysine_decarbox. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGDH_ECOLI
AccessioniPrimary (citable) accession number: P0ADR8
Secondary accession number(s): P37350, Q2MA39, Q46921
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: September 7, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.