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Protein

UPF0382 inner membrane protein YgdD

Gene

ygdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11793-MONOMER.
ECOL316407:JW2778-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0382 inner membrane protein YgdD
Gene namesi
Name:ygdD
Ordered Locus Names:b2807, JW2778
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11793. ygdD.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 44PeriplasmicSequence analysis
Transmembranei5 – 2521HelicalSequence analysisAdd
BLAST
Topological domaini26 – 6439CytoplasmicSequence analysisAdd
BLAST
Transmembranei65 – 8521HelicalSequence analysisAdd
BLAST
Topological domaini86 – 9712PeriplasmicSequence analysisAdd
BLAST
Transmembranei98 – 11821HelicalSequence analysisAdd
BLAST
Topological domaini119 – 13113CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 131131UPF0382 inner membrane protein YgdDPRO_0000169329Add
BLAST

Proteomic databases

PaxDbiP0ADR2.

Interactioni

Protein-protein interaction databases

BioGridi4260934. 29 interactions.
STRINGi511145.b2807.

Structurei

3D structure databases

ProteinModelPortaliP0ADR2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0382 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105M08. Bacteria.
COG2363. LUCA.
HOGENOMiHOG000252654.
InParanoidiP0ADR2.
OMAiARYQMYH.
PhylomeDBiP0ADR2.

Family and domain databases

InterProiIPR006696. DUF423.
[Graphical view]
PfamiPF04241. DUF423. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSRFMLIFA AISGFIFVAL GAFGAHVLSK TMGAVEMGWI QTGLEYQAFH
60 70 80 90 100
TLAILGLAVA MQRRISIWFY WSSVFLALGT VLFSGSLYCL ALSHLRLWAF
110 120 130
VTPVGGVSFL AGWALMLVGA IRLKRKGVSH E
Length:131
Mass (Da):14,333
Last modified:December 6, 2005 - v1
Checksum:i2EE9FD9B596012DD
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti34 – 341A → G in AAC13743 (PubMed:8188587).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01030 Genomic DNA. Translation: AAC13743.1.
X73413 Genomic DNA. Translation: CAA51814.1.
U29581 Genomic DNA. Translation: AAB40457.1.
U00096 Genomic DNA. Translation: AAC75849.1.
AP009048 Genomic DNA. Translation: BAE76879.1.
PIRiI41066.
RefSeqiNP_417287.1. NC_000913.3.
WP_000203905.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75849; AAC75849; b2807.
BAE76879; BAE76879; BAE76879.
GeneIDi947279.
KEGGiecj:JW2778.
eco:b2807.
PATRICi32121030. VBIEscCol129921_2907.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01030 Genomic DNA. Translation: AAC13743.1.
X73413 Genomic DNA. Translation: CAA51814.1.
U29581 Genomic DNA. Translation: AAB40457.1.
U00096 Genomic DNA. Translation: AAC75849.1.
AP009048 Genomic DNA. Translation: BAE76879.1.
PIRiI41066.
RefSeqiNP_417287.1. NC_000913.3.
WP_000203905.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADR2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260934. 29 interactions.
STRINGi511145.b2807.

Proteomic databases

PaxDbiP0ADR2.

Protocols and materials databases

DNASUi947279.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75849; AAC75849; b2807.
BAE76879; BAE76879; BAE76879.
GeneIDi947279.
KEGGiecj:JW2778.
eco:b2807.
PATRICi32121030. VBIEscCol129921_2907.

Organism-specific databases

EchoBASEiEB1741.
EcoGeneiEG11793. ygdD.

Phylogenomic databases

eggNOGiENOG4105M08. Bacteria.
COG2363. LUCA.
HOGENOMiHOG000252654.
InParanoidiP0ADR2.
OMAiARYQMYH.
PhylomeDBiP0ADR2.

Enzyme and pathway databases

BioCyciEcoCyc:EG11793-MONOMER.
ECOL316407:JW2778-MONOMER.

Miscellaneous databases

PROiP0ADR2.

Family and domain databases

InterProiIPR006696. DUF423.
[Graphical view]
PfamiPF04241. DUF423. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGDD_ECOLI
AccessioniPrimary (citable) accession number: P0ADR2
Secondary accession number(s): P32065, Q2MA27, Q46667
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: September 7, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.