Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0382 inner membrane protein YgdD

Gene

ygdD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11793-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0382 inner membrane protein YgdD
Gene namesi
Name:ygdD
Ordered Locus Names:b2807, JW2778
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11793 ygdD

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 4PeriplasmicSequence analysis4
Transmembranei5 – 25HelicalSequence analysisAdd BLAST21
Topological domaini26 – 64CytoplasmicSequence analysisAdd BLAST39
Transmembranei65 – 85HelicalSequence analysisAdd BLAST21
Topological domaini86 – 97PeriplasmicSequence analysisAdd BLAST12
Transmembranei98 – 118HelicalSequence analysisAdd BLAST21
Topological domaini119 – 131CytoplasmicSequence analysisAdd BLAST13

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693291 – 131UPF0382 inner membrane protein YgdDAdd BLAST131

Proteomic databases

PaxDbiP0ADR2
PRIDEiP0ADR2

Interactioni

Protein-protein interaction databases

BioGridi4260934, 30 interactors
STRINGi316385.ECDH10B_2976

Structurei

3D structure databases

ProteinModelPortaliP0ADR2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0382 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105M08 Bacteria
COG2363 LUCA
HOGENOMiHOG000252654
InParanoidiP0ADR2
OMAiYQFYHTF
PhylomeDBiP0ADR2

Family and domain databases

InterProiView protein in InterPro
IPR006696 DUF423
PANTHERiPTHR43461 PTHR43461, 1 hit
PfamiView protein in Pfam
PF04241 DUF423, 1 hit

Sequencei

Sequence statusi: Complete.

P0ADR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSRFMLIFA AISGFIFVAL GAFGAHVLSK TMGAVEMGWI QTGLEYQAFH
60 70 80 90 100
TLAILGLAVA MQRRISIWFY WSSVFLALGT VLFSGSLYCL ALSHLRLWAF
110 120 130
VTPVGGVSFL AGWALMLVGA IRLKRKGVSH E
Length:131
Mass (Da):14,333
Last modified:December 6, 2005 - v1
Checksum:i2EE9FD9B596012DD
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti34A → G in AAC13743 (PubMed:8188587).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U01030 Genomic DNA Translation: AAC13743.1
X73413 Genomic DNA Translation: CAA51814.1
U29581 Genomic DNA Translation: AAB40457.1
U00096 Genomic DNA Translation: AAC75849.1
AP009048 Genomic DNA Translation: BAE76879.1
PIRiI41066
RefSeqiNP_417287.1, NC_000913.3
WP_000203905.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75849; AAC75849; b2807
BAE76879; BAE76879; BAE76879
GeneIDi947279
KEGGiecj:JW2778
eco:b2807
PATRICifig|1411691.4.peg.3926

Similar proteinsi

Entry informationi

Entry nameiYGDD_ECOLI
AccessioniPrimary (citable) accession number: P0ADR2
Secondary accession number(s): P32065, Q2MA27, Q46667
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: March 28, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health