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Protein

Inner membrane protein YqaA

Gene

yqaA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7407-MONOMER.
ECOL316407:JW2664-MONOMER.
RETL1328306-WGS:GSTH-6073-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YqaA
Gene namesi
Name:yqaA
Ordered Locus Names:b2689, JW2664
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13529. yqaA.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 22CytoplasmicSequence analysis
Transmembranei3 – 2321HelicalSequence analysisAdd
BLAST
Topological domaini24 – 263PeriplasmicSequence analysis
Transmembranei27 – 4721HelicalSequence analysisAdd
BLAST
Topological domaini48 – 8639CytoplasmicSequence analysisAdd
BLAST
Transmembranei87 – 10721HelicalSequence analysisAdd
BLAST
Topological domaini108 – 14235PeriplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 142142Inner membrane protein YqaAPRO_0000169306Add
BLAST

Proteomic databases

PaxDbiP0ADR0.

Interactioni

Protein-protein interaction databases

BioGridi4262272. 13 interactions.
STRINGi511145.b2689.

Structurei

3D structure databases

ProteinModelPortaliP0ADR0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_0489.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105W39. Bacteria.
COG1238. LUCA.
HOGENOMiHOG000183101.
InParanoidiP0ADR0.
OMAiRYAAVAW.
OrthoDBiEOG6VF37Q.
PhylomeDBiP0ADR0.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADR0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEALSLFSL FASSFLSATL LPGNSEVVLV AMLLSGISHP WVLVLTATMG
60 70 80 90 100
NSLGGLTNVI LGRFFPLRKT SRWQEKATGW LKRYGAVTLL LSWMPVVGDL
110 120 130 140
LCLLAGWMRI SWGPVIFFLC LGKALRYVAV AAATVQGMMW WH
Length:142
Mass (Da):15,590
Last modified:December 6, 2005 - v1
Checksum:i7422E29696F51C89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75736.1.
AP009048 Genomic DNA. Translation: BAA16556.2.
PIRiB65049.
RefSeqiNP_417174.1. NC_000913.3.
WP_001287454.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75736; AAC75736; b2689.
BAA16556; BAA16556; BAA16556.
GeneIDi945419.
KEGGiecj:JW2664.
eco:b2689.
PATRICi32120772. VBIEscCol129921_2783.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75736.1.
AP009048 Genomic DNA. Translation: BAA16556.2.
PIRiB65049.
RefSeqiNP_417174.1. NC_000913.3.
WP_001287454.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADR0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262272. 13 interactions.
STRINGi511145.b2689.

Proteomic databases

PaxDbiP0ADR0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75736; AAC75736; b2689.
BAA16556; BAA16556; BAA16556.
GeneIDi945419.
KEGGiecj:JW2664.
eco:b2689.
PATRICi32120772. VBIEscCol129921_2783.

Organism-specific databases

EchoBASEiEB3300.
EcoGeneiEG13529. yqaA.

Phylogenomic databases

eggNOGiENOG4105W39. Bacteria.
COG1238. LUCA.
HOGENOMiHOG000183101.
InParanoidiP0ADR0.
OMAiRYAAVAW.
OrthoDBiEOG6VF37Q.
PhylomeDBiP0ADR0.

Enzyme and pathway databases

BioCyciEcoCyc:G7407-MONOMER.
ECOL316407:JW2664-MONOMER.
RETL1328306-WGS:GSTH-6073-MONOMER.

Miscellaneous databases

PROiP0ADR0.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYQAA_ECOLI
AccessioniPrimary (citable) accession number: P0ADR0
Secondary accession number(s): P76631, P77028
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: January 20, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.