Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein YihD

Gene

yihD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11830-MONOMER.
ECOL316407:JW3830-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YihD
Gene namesi
Name:yihD
Ordered Locus Names:b3858, JW3830
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11830. yihD.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8989Protein YihDPRO_0000169670Add
BLAST

Proteomic databases

EPDiP0ADP9.
PaxDbiP0ADP9.
PRIDEiP0ADP9.

Interactioni

Protein-protein interaction databases

BioGridi4262623. 8 interactions.
IntActiP0ADP9. 2 interactions.
STRINGi511145.b3858.

Structurei

3D structure databases

ProteinModelPortaliP0ADP9.
SMRiP0ADP9. Positions 1-89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_0845.Curated

Phylogenomic databases

eggNOGiENOG4105PC1. Bacteria.
COG3084. LUCA.
HOGENOMiHOG000284974.
InParanoidiP0ADP9.
KOiK09896.
OMAiKDEMIPG.
OrthoDBiEOG6JB17F.

Family and domain databases

InterProiIPR009383. DUF1040.
[Graphical view]
PfamiPF06288. DUF1040. 1 hit.
[Graphical view]
ProDomiPD029038. DUF1040. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P0ADP9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKCKRLNEVI ELLQPAWQKE PDLNLLQFLQ KLAKESGFDG ELADLTDDIL
60 70 80
IYHLKMRDSA KDAVIPGLQK DYEEDFKTAL LRARGVIKE
Length:89
Mass (Da):10,273
Last modified:December 6, 2005 - v1
Checksum:i307E75C1D700DF92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB02993.1.
U00096 Genomic DNA. Translation: AAC76856.1.
AP009048 Genomic DNA. Translation: BAE77450.1.
PIRiS40804.
RefSeqiNP_418295.1. NC_000913.3.
WP_001295263.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76856; AAC76856; b3858.
BAE77450; BAE77450; BAE77450.
GeneIDi948348.
KEGGiecj:JW3830.
eco:b3858.
PATRICi32123213. VBIEscCol129921_3967.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB02993.1.
U00096 Genomic DNA. Translation: AAC76856.1.
AP009048 Genomic DNA. Translation: BAE77450.1.
PIRiS40804.
RefSeqiNP_418295.1. NC_000913.3.
WP_001295263.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADP9.
SMRiP0ADP9. Positions 1-89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262623. 8 interactions.
IntActiP0ADP9. 2 interactions.
STRINGi511145.b3858.

Proteomic databases

EPDiP0ADP9.
PaxDbiP0ADP9.
PRIDEiP0ADP9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76856; AAC76856; b3858.
BAE77450; BAE77450; BAE77450.
GeneIDi948348.
KEGGiecj:JW3830.
eco:b3858.
PATRICi32123213. VBIEscCol129921_3967.

Organism-specific databases

EchoBASEiEB1777.
EcoGeneiEG11830. yihD.

Phylogenomic databases

eggNOGiENOG4105PC1. Bacteria.
COG3084. LUCA.
HOGENOMiHOG000284974.
InParanoidiP0ADP9.
KOiK09896.
OMAiKDEMIPG.
OrthoDBiEOG6JB17F.

Enzyme and pathway databases

BioCyciEcoCyc:EG11830-MONOMER.
ECOL316407:JW3830-MONOMER.

Miscellaneous databases

PROiP0ADP9.

Family and domain databases

InterProiIPR009383. DUF1040.
[Graphical view]
PfamiPF06288. DUF1040. 1 hit.
[Graphical view]
ProDomiPD029038. DUF1040. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes."
    Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 21:3391-3398(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Small genes/gene-products in Escherichia coli K-12."
    Wasinger V.C., Humphery-Smith I.
    FEMS Microbiol. Lett. 169:375-382(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 1-10.
    Strain: K12.

Entry informationi

Entry nameiYIHD_ECOLI
AccessioniPrimary (citable) accession number: P0ADP9
Secondary accession number(s): P32126, Q2M8F6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: March 16, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.