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Protein

UPF0438 protein YifE

Gene

yifE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11450-MONOMER.
ECOL316407:JW3737-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0438 protein YifE
Gene namesi
Name:yifE
Ordered Locus Names:b3764, JW3737
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11450. yifE.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001696412 – 112UPF0438 protein YifEAdd BLAST111

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei15N6-acetyllysine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

EPDiP0ADN2.
PaxDbiP0ADN2.
PRIDEiP0ADN2.

Interactioni

Protein-protein interaction databases

BioGridi4261473. 10 interactors.
DIPiDIP-48206N.
IntActiP0ADN2. 6 interactors.
STRINGi511145.b3764.

Structurei

3D structure databases

ProteinModelPortaliP0ADN2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0438 family.Curated

Phylogenomic databases

eggNOGiENOG4108WFC. Bacteria.
COG3085. LUCA.
HOGENOMiHOG000293081.
KOiK09897.
OMAiQFVAVCR.

Family and domain databases

InterProiIPR007335. DUF413.
[Graphical view]
PfamiPF04219. DUF413. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADN2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAESFTTTNR YFDNKHYPRG FSRHGDFTIK EAQLLERHGY AFNELDLGKR
60 70 80 90 100
EPVTEEEKLF VAVCRGEREP VTEAERVWSK YMTRIKRPKR FHTLSGGKPQ
110
VEGAEDYTDS DD
Length:112
Mass (Da):13,134
Last modified:January 23, 2007 - v2
Checksum:iEB2F585318770224
GO

Sequence cautioni

The sequence AAA67568 differs from that shown. Reason: Frameshift at position 3.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M87049 Genomic DNA. Translation: AAA67568.1. Frameshift.
M37337 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC77485.1.
AP009048 Genomic DNA. Translation: BAE77531.1.
PIRiG65179.
RefSeqiNP_418213.1. NC_000913.3.
WP_000841001.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77485; AAC77485; b3764.
BAE77531; BAE77531; BAE77531.
GeneIDi948274.
KEGGiecj:JW3737.
eco:b3764.
PATRICi32123025. VBIEscCol129921_3882.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M87049 Genomic DNA. Translation: AAA67568.1. Frameshift.
M37337 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC77485.1.
AP009048 Genomic DNA. Translation: BAE77531.1.
PIRiG65179.
RefSeqiNP_418213.1. NC_000913.3.
WP_000841001.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADN2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261473. 10 interactors.
DIPiDIP-48206N.
IntActiP0ADN2. 6 interactors.
STRINGi511145.b3764.

Proteomic databases

EPDiP0ADN2.
PaxDbiP0ADN2.
PRIDEiP0ADN2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77485; AAC77485; b3764.
BAE77531; BAE77531; BAE77531.
GeneIDi948274.
KEGGiecj:JW3737.
eco:b3764.
PATRICi32123025. VBIEscCol129921_3882.

Organism-specific databases

EchoBASEiEB1419.
EcoGeneiEG11450. yifE.

Phylogenomic databases

eggNOGiENOG4108WFC. Bacteria.
COG3085. LUCA.
HOGENOMiHOG000293081.
KOiK09897.
OMAiQFVAVCR.

Enzyme and pathway databases

BioCyciEcoCyc:EG11450-MONOMER.
ECOL316407:JW3737-MONOMER.

Miscellaneous databases

PROiP0ADN2.

Family and domain databases

InterProiIPR007335. DUF413.
[Graphical view]
PfamiPF04219. DUF413. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIFE_ECOLI
AccessioniPrimary (citable) accession number: P0ADN2
Secondary accession number(s): P27827, Q2M875
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.