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Protein

Inner membrane protein YidH

Gene

yidH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • response to oxidative stress Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11696-MONOMER.
ECOL316407:JW3652-MONOMER.

Protein family/group databases

TCDBi9.B.51.1.1. the uncharacterized duf202/yidh (yidh) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YidH
Gene namesi
Name:yidH
Ordered Locus Names:b3676, JW3652
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11696. yidH.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3030CytoplasmicSequence analysisAdd
BLAST
Transmembranei31 – 5121HelicalSequence analysisAdd
BLAST
Topological domaini52 – 532PeriplasmicSequence analysis
Transmembranei54 – 7421HelicalSequence analysisAdd
BLAST
Topological domaini75 – 9218CytoplasmicSequence analysisAdd
BLAST
Transmembranei93 – 11321HelicalSequence analysisAdd
BLAST
Topological domaini114 – 1152PeriplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 115115Inner membrane protein YidHPRO_0000169628Add
BLAST

Proteomic databases

PaxDbiP0ADM0.

Interactioni

Protein-protein interaction databases

BioGridi4262587. 6 interactions.
DIPiDIP-47894N.
STRINGi511145.b3676.

Structurei

3D structure databases

ProteinModelPortaliP0ADM0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To M.tuberculosis Rv2272.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105VG5. Bacteria.
COG2149. LUCA.
HOGENOMiHOG000236086.
InParanoidiP0ADM0.
KOiK00389.
OMAiCERAMRR.
OrthoDBiEOG6WQD83.
PhylomeDBiP0ADM0.

Family and domain databases

InterProiIPR003807. DUF202.
[Graphical view]
PfamiPF02656. DUF202. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKISRLGEAP DYRFSLANER TFLAWIRTAL GFLAAGVGLD QLAPDFATPV
60 70 80 90 100
IRELLALLLC LFSGGLAMYG YLRWLRNEKA MRLKEDLPYT NSLLIISLIL
110
MVVAVIVMGL VLYAG
Length:115
Mass (Da):12,779
Last modified:December 6, 2005 - v1
Checksum:i59E08E0F3EA7125A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62028.1.
U00096 Genomic DNA. Translation: AAC76699.1.
AP009048 Genomic DNA. Translation: BAE77617.1.
PIRiE65169.
RefSeqiNP_418132.1. NC_000913.3.
WP_000703959.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76699; AAC76699; b3676.
BAE77617; BAE77617; BAE77617.
GeneIDi948190.
KEGGiecj:JW3652.
eco:b3676.
PATRICi32122843. VBIEscCol129921_3797.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62028.1.
U00096 Genomic DNA. Translation: AAC76699.1.
AP009048 Genomic DNA. Translation: BAE77617.1.
PIRiE65169.
RefSeqiNP_418132.1. NC_000913.3.
WP_000703959.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADM0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262587. 6 interactions.
DIPiDIP-47894N.
STRINGi511145.b3676.

Protein family/group databases

TCDBi9.B.51.1.1. the uncharacterized duf202/yidh (yidh) family.

Proteomic databases

PaxDbiP0ADM0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76699; AAC76699; b3676.
BAE77617; BAE77617; BAE77617.
GeneIDi948190.
KEGGiecj:JW3652.
eco:b3676.
PATRICi32122843. VBIEscCol129921_3797.

Organism-specific databases

EchoBASEiEB1647.
EcoGeneiEG11696. yidH.

Phylogenomic databases

eggNOGiENOG4105VG5. Bacteria.
COG2149. LUCA.
HOGENOMiHOG000236086.
InParanoidiP0ADM0.
KOiK00389.
OMAiCERAMRR.
OrthoDBiEOG6WQD83.
PhylomeDBiP0ADM0.

Enzyme and pathway databases

BioCyciEcoCyc:EG11696-MONOMER.
ECOL316407:JW3652-MONOMER.

Miscellaneous databases

PROiP0ADM0.

Family and domain databases

InterProiIPR003807. DUF202.
[Graphical view]
PfamiPF02656. DUF202. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication."
    Burland V.D., Plunkett G. III, Daniels D.L., Blattner F.R.
    Genomics 16:551-561(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYIDH_ECOLI
AccessioniPrimary (citable) accession number: P0ADM0
Secondary accession number(s): P31445, Q2M7Y9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: January 20, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.