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Protein

Protein YibA

Gene

yibA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • response to antibiotic Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11187-MONOMER.
ECOL316407:JW3568-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YibA
Gene namesi
Name:yibA
Ordered Locus Names:b3594, JW3568
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11187. yibA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001696041 – 280Protein YibAAdd BLAST280

Proteomic databases

PaxDbiP0ADK6.
PRIDEiP0ADK6.

Interactioni

Protein-protein interaction databases

BioGridi4262559. 10 interactors.
DIPiDIP-48203N.
IntActiP0ADK6. 10 interactors.
MINTiMINT-1263383.
STRINGi511145.b3594.

Structurei

Secondary structure

1280
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi14 – 21Combined sources8
Helixi25 – 31Combined sources7
Helixi37 – 50Combined sources14
Helixi53 – 63Combined sources11
Helixi68 – 80Combined sources13
Turni85 – 87Combined sources3
Helixi88 – 101Combined sources14
Helixi105 – 121Combined sources17
Helixi123 – 125Combined sources3
Helixi126 – 136Combined sources11
Helixi142 – 153Combined sources12
Helixi161 – 168Combined sources8
Helixi173 – 186Combined sources14
Helixi191 – 200Combined sources10
Helixi206 – 218Combined sources13
Helixi222 – 224Combined sources3
Helixi225 – 232Combined sources8
Beta strandi234 – 236Combined sources3
Helixi239 – 248Combined sources10
Helixi251 – 253Combined sources3
Helixi254 – 261Combined sources8
Helixi268 – 277Combined sources10

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OYZX-ray2.10A1-280[»]
ProteinModelPortaliP0ADK6.
SMRiP0ADK6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADK6.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105NUP. Bacteria.
ENOG41127FW. LUCA.
HOGENOMiHOG000009633.
InParanoidiP0ADK6.
OMAiVKNWAAF.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

P0ADK6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNTYQKRKA SKEYGLYNQC KKLNDDELFR LLDDHNSLKR ISSARVLQLR
60 70 80 90 100
GGQDAVRLAI EFCSDKNYIR RDIGAFILGQ IKICKKCEDN VFNILNNMAL
110 120 130 140 150
NDKSACVRAT AIESTAQRCK KNPIYSPKIV EQSQITAFDK STNVRRATAF
160 170 180 190 200
AISVINDKAT IPLLINLLKD PNGDVRNWAA FAININKYDN SDIRDCFVEM
210 220 230 240 250
LQDKNEEVRI EAIIGLSYRK DKRVLSVLCD ELKKNTVYDD IIEAAGELGD
260 270 280
KTLLPVLDTM LYKFDDNEII TSAIDKLKRS
Length:280
Mass (Da):31,874
Last modified:December 6, 2005 - v1
Checksum:i54A83B1C21889035
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95066.1.
U00039 Genomic DNA. Translation: AAB18571.1.
U00096 Genomic DNA. Translation: AAC76618.1.
AP009048 Genomic DNA. Translation: BAE77699.1.
PIRiS47815.
RefSeqiNP_418051.1. NC_000913.3.
WP_000072850.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76618; AAC76618; b3594.
BAE77699; BAE77699; BAE77699.
GeneIDi948108.
KEGGiecj:JW3568.
eco:b3594.
PATRICi32122668. VBIEscCol129921_3711.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95066.1.
U00039 Genomic DNA. Translation: AAB18571.1.
U00096 Genomic DNA. Translation: AAC76618.1.
AP009048 Genomic DNA. Translation: BAE77699.1.
PIRiS47815.
RefSeqiNP_418051.1. NC_000913.3.
WP_000072850.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1OYZX-ray2.10A1-280[»]
ProteinModelPortaliP0ADK6.
SMRiP0ADK6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262559. 10 interactors.
DIPiDIP-48203N.
IntActiP0ADK6. 10 interactors.
MINTiMINT-1263383.
STRINGi511145.b3594.

Proteomic databases

PaxDbiP0ADK6.
PRIDEiP0ADK6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76618; AAC76618; b3594.
BAE77699; BAE77699; BAE77699.
GeneIDi948108.
KEGGiecj:JW3568.
eco:b3594.
PATRICi32122668. VBIEscCol129921_3711.

Organism-specific databases

EchoBASEiEB1173.
EcoGeneiEG11187. yibA.

Phylogenomic databases

eggNOGiENOG4105NUP. Bacteria.
ENOG41127FW. LUCA.
HOGENOMiHOG000009633.
InParanoidiP0ADK6.
OMAiVKNWAAF.

Enzyme and pathway databases

BioCyciEcoCyc:EG11187-MONOMER.
ECOL316407:JW3568-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ADK6.
PROiP0ADK6.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYIBA_ECOLI
AccessioniPrimary (citable) accession number: P0ADK6
Secondary accession number(s): P24172, Q2M7Q7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: November 2, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.