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Protein

Isochorismatase family protein YecD

Gene

yecD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciEcoCyc:EG12378-MONOMER.
ECOL316407:JW5307-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Isochorismatase family protein YecD (EC:3.-.-.-)
Gene namesi
Name:yecD
Ordered Locus Names:b1867, JW5307
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12378. yecD.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002018311 – 188Isochorismatase family protein YecDAdd BLAST188

Proteomic databases

EPDiP0ADI7.
PaxDbiP0ADI7.
PRIDEiP0ADI7.

Interactioni

Protein-protein interaction databases

BioGridi4259332. 5 interactors.
STRINGi511145.b1867.

Structurei

Secondary structure

1188
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 8Combined sources3
Beta strandi9 – 14Combined sources6
Turni18 – 20Combined sources3
Helixi21 – 23Combined sources3
Beta strandi26 – 28Combined sources3
Helixi30 – 46Combined sources17
Beta strandi51 – 56Combined sources6
Turni81 – 84Combined sources4
Helixi88 – 90Combined sources3
Beta strandi96 – 107Combined sources12
Helixi112 – 118Combined sources7
Beta strandi123 – 129Combined sources7
Turni131 – 133Combined sources3
Helixi134 – 144Combined sources11
Beta strandi148 – 160Combined sources13
Helixi161 – 170Combined sources10
Helixi172 – 175Combined sources4
Beta strandi176 – 179Combined sources4
Helixi181 – 187Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1J2RX-ray1.30A/B/C/D1-188[»]
ProteinModelPortaliP0ADI7.
SMRiP0ADI7.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ADI7.

Family & Domainsi

Sequence similaritiesi

Belongs to the isochorismatase family.Curated

Phylogenomic databases

eggNOGiENOG4105D3W. Bacteria.
COG1335. LUCA.
HOGENOMiHOG000078668.
InParanoidiP0ADI7.
OMAiNNGFIVF.
PhylomeDBiP0ADI7.

Family and domain databases

Gene3Di3.40.50.850. 1 hit.
InterProiIPR000868. Isochorismatase-like.
[Graphical view]
PfamiPF00857. Isochorismatase. 1 hit.
[Graphical view]
SUPFAMiSSF52499. SSF52499. 1 hit.

Sequencei

Sequence statusi: Complete.

P0ADI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLELNAKTTA LVVIDLQEGI LPFAGGPHTA DEVVNRAGKL AAKFRASGQP
60 70 80 90 100
VFLVRVGWSA DYAEALKQPV DAPSPAKVLP ENWWQHPAAL GATDSDIEII
110 120 130 140 150
KRQWGAFYGT DLELQLRRRG IDTIVLCGIS TNIGVESTAR NAWELGFNLV
160 170 180
IAEDACSAAS AEQHNNSINH IYPRIARVRS VEEILNAL
Length:188
Mass (Da):20,452
Last modified:January 15, 2008 - v2
Checksum:i3850DE203370249E
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti180 – 188SVEEILNAL → TWKRSSTRYDLHRSTAMVAS (PubMed:2129559).Curated9

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X53863 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74937.2.
AP009048 Genomic DNA. Translation: BAA15678.1.
PIRiC64949.
RefSeqiNP_416381.2. NC_000913.3.
WP_000891621.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74937; AAC74937; b1867.
BAA15678; BAA15678; BAA15678.
GeneIDi946384.
KEGGiecj:JW5307.
eco:b1867.
PATRICi32119057. VBIEscCol129921_1946.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X53863 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74937.2.
AP009048 Genomic DNA. Translation: BAA15678.1.
PIRiC64949.
RefSeqiNP_416381.2. NC_000913.3.
WP_000891621.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1J2RX-ray1.30A/B/C/D1-188[»]
ProteinModelPortaliP0ADI7.
SMRiP0ADI7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259332. 5 interactors.
STRINGi511145.b1867.

Proteomic databases

EPDiP0ADI7.
PaxDbiP0ADI7.
PRIDEiP0ADI7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74937; AAC74937; b1867.
BAA15678; BAA15678; BAA15678.
GeneIDi946384.
KEGGiecj:JW5307.
eco:b1867.
PATRICi32119057. VBIEscCol129921_1946.

Organism-specific databases

EchoBASEiEB2280.
EcoGeneiEG12378. yecD.

Phylogenomic databases

eggNOGiENOG4105D3W. Bacteria.
COG1335. LUCA.
HOGENOMiHOG000078668.
InParanoidiP0ADI7.
OMAiNNGFIVF.
PhylomeDBiP0ADI7.

Enzyme and pathway databases

BioCyciEcoCyc:EG12378-MONOMER.
ECOL316407:JW5307-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ADI7.
PROiP0ADI7.

Family and domain databases

Gene3Di3.40.50.850. 1 hit.
InterProiIPR000868. Isochorismatase-like.
[Graphical view]
PfamiPF00857. Isochorismatase. 1 hit.
[Graphical view]
SUPFAMiSSF52499. SSF52499. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYECD_ECOLI
AccessioniPrimary (citable) accession number: P0ADI7
Secondary accession number(s): P37347, P76287
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: January 15, 2008
Last modified: November 2, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.