SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P0ADI7

- YECD_ECOLI

UniProt

P0ADI7 - YECD_ECOLI

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Isochorismatase family protein YecD
Gene
yecD, b1867, JW5307
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. hydrolase activity Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Keywords - Molecular functioni

    Hydrolase

    Enzyme and pathway databases

    BioCyciEcoCyc:EG12378-MONOMER.
    ECOL316407:JW5307-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Isochorismatase family protein YecD (EC:3.-.-.-)
    Gene namesi
    Name:yecD
    Ordered Locus Names:b1867, JW5307
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG12378. yecD.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 188188Isochorismatase family protein YecD
    PRO_0000201831Add
    BLAST

    Proteomic databases

    PaxDbiP0ADI7.

    Expressioni

    Gene expression databases

    GenevestigatoriP0ADI7.

    Interactioni

    Protein-protein interaction databases

    STRINGi511145.b1867.

    Structurei

    Secondary structure

    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 83
    Beta strandi9 – 146
    Turni18 – 203
    Helixi21 – 233
    Beta strandi26 – 283
    Helixi30 – 4617
    Beta strandi51 – 566
    Turni81 – 844
    Helixi88 – 903
    Beta strandi96 – 10712
    Helixi112 – 1187
    Beta strandi123 – 1297
    Turni131 – 1333
    Helixi134 – 14411
    Beta strandi148 – 16013
    Helixi161 – 17010
    Helixi172 – 1754
    Beta strandi176 – 1794
    Helixi181 – 1877

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1J2RX-ray1.30A/B/C/D1-188[»]
    ProteinModelPortaliP0ADI7.
    SMRiP0ADI7. Positions 1-188.

    Miscellaneous databases

    EvolutionaryTraceiP0ADI7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the isochorismatase family.

    Phylogenomic databases

    eggNOGiCOG1335.
    HOGENOMiHOG000078668.
    OMAiFSLVIAE.
    OrthoDBiEOG6MM1KP.
    PhylomeDBiP0ADI7.

    Family and domain databases

    Gene3Di3.40.50.850. 1 hit.
    InterProiIPR000868. Isochorismatase-like.
    [Graphical view]
    PfamiPF00857. Isochorismatase. 1 hit.
    [Graphical view]
    SUPFAMiSSF52499. SSF52499. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P0ADI7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLELNAKTTA LVVIDLQEGI LPFAGGPHTA DEVVNRAGKL AAKFRASGQP    50
    VFLVRVGWSA DYAEALKQPV DAPSPAKVLP ENWWQHPAAL GATDSDIEII 100
    KRQWGAFYGT DLELQLRRRG IDTIVLCGIS TNIGVESTAR NAWELGFNLV 150
    IAEDACSAAS AEQHNNSINH IYPRIARVRS VEEILNAL 188
    Length:188
    Mass (Da):20,452
    Last modified:January 15, 2008 - v2
    Checksum:i3850DE203370249E
    GO

    Sequence conflict

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti180 – 1889SVEEILNAL → TWKRSSTRYDLHRSTAMVAS1 Publication

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X53863 Genomic DNA. No translation available.
    U00096 Genomic DNA. Translation: AAC74937.2.
    AP009048 Genomic DNA. Translation: BAA15678.1.
    PIRiC64949.
    RefSeqiNP_416381.2. NC_000913.3.
    YP_490129.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74937; AAC74937; b1867.
    BAA15678; BAA15678; BAA15678.
    GeneIDi12930338.
    946384.
    KEGGiecj:Y75_p1843.
    eco:b1867.
    PATRICi32119057. VBIEscCol129921_1946.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X53863 Genomic DNA. No translation available.
    U00096 Genomic DNA. Translation: AAC74937.2 .
    AP009048 Genomic DNA. Translation: BAA15678.1 .
    PIRi C64949.
    RefSeqi NP_416381.2. NC_000913.3.
    YP_490129.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1J2R X-ray 1.30 A/B/C/D 1-188 [» ]
    ProteinModelPortali P0ADI7.
    SMRi P0ADI7. Positions 1-188.
    ModBasei Search...

    Protein-protein interaction databases

    STRINGi 511145.b1867.

    Proteomic databases

    PaxDbi P0ADI7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74937 ; AAC74937 ; b1867 .
    BAA15678 ; BAA15678 ; BAA15678 .
    GeneIDi 12930338.
    946384.
    KEGGi ecj:Y75_p1843.
    eco:b1867.
    PATRICi 32119057. VBIEscCol129921_1946.

    Organism-specific databases

    EchoBASEi EB2280.
    EcoGenei EG12378. yecD.

    Phylogenomic databases

    eggNOGi COG1335.
    HOGENOMi HOG000078668.
    OMAi FSLVIAE.
    OrthoDBi EOG6MM1KP.
    PhylomeDBi P0ADI7.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG12378-MONOMER.
    ECOL316407:JW5307-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0ADI7.
    PROi P0ADI7.

    Gene expression databases

    Genevestigatori P0ADI7.

    Family and domain databases

    Gene3Di 3.40.50.850. 1 hit.
    InterProi IPR000868. Isochorismatase-like.
    [Graphical view ]
    Pfami PF00857. Isochorismatase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52499. SSF52499. 1 hit.
    ProtoNeti Search...

    Publicationsi

    « Hide 'large scale' publications
    1. "Aspartyl-tRNA synthetase from Escherichia coli: cloning and characterisation of the gene, homologies of its translated amino acid sequence with asparaginyl- and lysyl-tRNA synthetases."
      Eriani G., Dirheimer G., Gangloff J.
      Nucleic Acids Res. 18:7109-7118(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
      Borodovsky M., Rudd K.E., Koonin E.V.
      Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (1.3 ANGSTROMS).

    Entry informationi

    Entry nameiYECD_ECOLI
    AccessioniPrimary (citable) accession number: P0ADI7
    Secondary accession number(s): P37347, P76287
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 6, 2005
    Last sequence update: January 15, 2008
    Last modified: May 14, 2014
    This is version 63 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3

    Similar proteinsi