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P0ADI7

- YECD_ECOLI

UniProt

P0ADI7 - YECD_ECOLI

Protein

Isochorismatase family protein YecD

Gene

yecD

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 2 (15 Jan 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. hydrolase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Enzyme and pathway databases

    BioCyciEcoCyc:EG12378-MONOMER.
    ECOL316407:JW5307-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Isochorismatase family protein YecD (EC:3.-.-.-)
    Gene namesi
    Name:yecD
    Ordered Locus Names:b1867, JW5307
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG12378. yecD.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 188188Isochorismatase family protein YecDPRO_0000201831Add
    BLAST

    Proteomic databases

    PaxDbiP0ADI7.

    Expressioni

    Gene expression databases

    GenevestigatoriP0ADI7.

    Interactioni

    Protein-protein interaction databases

    STRINGi511145.b1867.

    Structurei

    Secondary structure

    1
    188
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi6 – 83
    Beta strandi9 – 146
    Turni18 – 203
    Helixi21 – 233
    Beta strandi26 – 283
    Helixi30 – 4617
    Beta strandi51 – 566
    Turni81 – 844
    Helixi88 – 903
    Beta strandi96 – 10712
    Helixi112 – 1187
    Beta strandi123 – 1297
    Turni131 – 1333
    Helixi134 – 14411
    Beta strandi148 – 16013
    Helixi161 – 17010
    Helixi172 – 1754
    Beta strandi176 – 1794
    Helixi181 – 1877

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1J2RX-ray1.30A/B/C/D1-188[»]
    ProteinModelPortaliP0ADI7.
    SMRiP0ADI7. Positions 1-188.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP0ADI7.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the isochorismatase family.Curated

    Phylogenomic databases

    eggNOGiCOG1335.
    HOGENOMiHOG000078668.
    OMAiFSLVIAE.
    OrthoDBiEOG6MM1KP.
    PhylomeDBiP0ADI7.

    Family and domain databases

    Gene3Di3.40.50.850. 1 hit.
    InterProiIPR000868. Isochorismatase-like.
    [Graphical view]
    PfamiPF00857. Isochorismatase. 1 hit.
    [Graphical view]
    SUPFAMiSSF52499. SSF52499. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P0ADI7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLELNAKTTA LVVIDLQEGI LPFAGGPHTA DEVVNRAGKL AAKFRASGQP    50
    VFLVRVGWSA DYAEALKQPV DAPSPAKVLP ENWWQHPAAL GATDSDIEII 100
    KRQWGAFYGT DLELQLRRRG IDTIVLCGIS TNIGVESTAR NAWELGFNLV 150
    IAEDACSAAS AEQHNNSINH IYPRIARVRS VEEILNAL 188
    Length:188
    Mass (Da):20,452
    Last modified:January 15, 2008 - v2
    Checksum:i3850DE203370249E
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti180 – 1889SVEEILNAL → TWKRSSTRYDLHRSTAMVAS(PubMed:2129559)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X53863 Genomic DNA. No translation available.
    U00096 Genomic DNA. Translation: AAC74937.2.
    AP009048 Genomic DNA. Translation: BAA15678.1.
    PIRiC64949.
    RefSeqiNP_416381.2. NC_000913.3.
    YP_490129.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74937; AAC74937; b1867.
    BAA15678; BAA15678; BAA15678.
    GeneIDi12930338.
    946384.
    KEGGiecj:Y75_p1843.
    eco:b1867.
    PATRICi32119057. VBIEscCol129921_1946.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X53863 Genomic DNA. No translation available.
    U00096 Genomic DNA. Translation: AAC74937.2 .
    AP009048 Genomic DNA. Translation: BAA15678.1 .
    PIRi C64949.
    RefSeqi NP_416381.2. NC_000913.3.
    YP_490129.1. NC_007779.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1J2R X-ray 1.30 A/B/C/D 1-188 [» ]
    ProteinModelPortali P0ADI7.
    SMRi P0ADI7. Positions 1-188.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 511145.b1867.

    Proteomic databases

    PaxDbi P0ADI7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74937 ; AAC74937 ; b1867 .
    BAA15678 ; BAA15678 ; BAA15678 .
    GeneIDi 12930338.
    946384.
    KEGGi ecj:Y75_p1843.
    eco:b1867.
    PATRICi 32119057. VBIEscCol129921_1946.

    Organism-specific databases

    EchoBASEi EB2280.
    EcoGenei EG12378. yecD.

    Phylogenomic databases

    eggNOGi COG1335.
    HOGENOMi HOG000078668.
    OMAi FSLVIAE.
    OrthoDBi EOG6MM1KP.
    PhylomeDBi P0ADI7.

    Enzyme and pathway databases

    BioCyci EcoCyc:EG12378-MONOMER.
    ECOL316407:JW5307-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P0ADI7.
    PROi P0ADI7.

    Gene expression databases

    Genevestigatori P0ADI7.

    Family and domain databases

    Gene3Di 3.40.50.850. 1 hit.
    InterProi IPR000868. Isochorismatase-like.
    [Graphical view ]
    Pfami PF00857. Isochorismatase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52499. SSF52499. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Aspartyl-tRNA synthetase from Escherichia coli: cloning and characterisation of the gene, homologies of its translated amino acid sequence with asparaginyl- and lysyl-tRNA synthetases."
      Eriani G., Dirheimer G., Gangloff J.
      Nucleic Acids Res. 18:7109-7118(1990) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: K12.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
      Borodovsky M., Rudd K.E., Koonin E.V.
      Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION.
    6. Cited for: X-RAY CRYSTALLOGRAPHY (1.3 ANGSTROMS).

    Entry informationi

    Entry nameiYECD_ECOLI
    AccessioniPrimary (citable) accession number: P0ADI7
    Secondary accession number(s): P37347, P76287
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 6, 2005
    Last sequence update: January 15, 2008
    Last modified: October 1, 2014
    This is version 64 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3