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Protein

Uncharacterized protein YgaU

Gene

ygaU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7395-MONOMER.
ECOL316407:JW2640-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YgaU
Gene namesi
Name:ygaU
Synonyms:yzzM
Ordered Locus Names:b2665, JW2640
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12675. ygaU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 149148Uncharacterized protein YgaUPRO_0000169832Add
BLAST

Proteomic databases

EPDiP0ADE6.
PaxDbiP0ADE6.
PRIDEiP0ADE6.

2D gel databases

SWISS-2DPAGEP0ADE6.

Interactioni

Protein-protein interaction databases

BioGridi4262266. 14 interactions.
DIPiDIP-48134N.
IntActiP0ADE6. 1 interaction.
MINTiMINT-1222147.
STRINGi511145.b2665.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5FIMNMR-A1-149[»]
ProteinModelPortaliP0ADE6.
SMRiP0ADE6. Positions 95-148.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini23 – 9169BONPROSITE-ProRule annotationAdd
BLAST
Domaini97 – 14650LysMPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 BON domain.PROSITE-ProRule annotation
Contains 1 LysM domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4109066. Bacteria.
COG1652. LUCA.
HOGENOMiHOG000261244.
InParanoidiP0ADE6.
OMAiAQYHDVV.
OrthoDBiEOG65J540.
PhylomeDBiP0ADE6.

Family and domain databases

Gene3Di3.10.350.10. 1 hit.
InterProiIPR007055. BON_dom.
IPR018392. LysM_dom.
IPR014004. Transpt-assoc_nodulatn_dom_bac.
[Graphical view]
PfamiPF04972. BON. 1 hit.
PF01476. LysM. 1 hit.
[Graphical view]
SMARTiSM00749. BON. 1 hit.
SM00257. LysM. 1 hit.
[Graphical view]
SUPFAMiSSF54106. SSF54106. 1 hit.
PROSITEiPS50914. BON. 1 hit.
PS51782. LYSM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P0ADE6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLFNFVKDA GEKLWDAVTG QHDKDDQAKK VQEHLNKTGI PDADKVNIQI
60 70 80 90 100
ADGKATVTGD GLSQEAKEKI LVAVGNISGI ASVDDQVKTA TPATASQFYT
110 120 130 140
VKSGDTLSAI SKQVYGNANL YNKIFEANKP MLKSPDKIYP GQVLRIPEE
Length:149
Mass (Da):16,063
Last modified:January 23, 2007 - v2
Checksum:iDEC6BAF7707DFAE1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75712.1.
AP009048 Genomic DNA. Translation: BAA16528.1.
PIRiB65046.
RefSeqiNP_417151.1. NC_000913.3.
WP_000522415.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75712; AAC75712; b2665.
BAA16528; BAA16528; BAA16528.
GeneIDi947144.
KEGGiecj:JW2640.
eco:b2665.
PATRICi32120720. VBIEscCol129921_2757.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75712.1.
AP009048 Genomic DNA. Translation: BAA16528.1.
PIRiB65046.
RefSeqiNP_417151.1. NC_000913.3.
WP_000522415.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
5FIMNMR-A1-149[»]
ProteinModelPortaliP0ADE6.
SMRiP0ADE6. Positions 95-148.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262266. 14 interactions.
DIPiDIP-48134N.
IntActiP0ADE6. 1 interaction.
MINTiMINT-1222147.
STRINGi511145.b2665.

2D gel databases

SWISS-2DPAGEP0ADE6.

Proteomic databases

EPDiP0ADE6.
PaxDbiP0ADE6.
PRIDEiP0ADE6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75712; AAC75712; b2665.
BAA16528; BAA16528; BAA16528.
GeneIDi947144.
KEGGiecj:JW2640.
eco:b2665.
PATRICi32120720. VBIEscCol129921_2757.

Organism-specific databases

EchoBASEiEB2540.
EcoGeneiEG12675. ygaU.

Phylogenomic databases

eggNOGiENOG4109066. Bacteria.
COG1652. LUCA.
HOGENOMiHOG000261244.
InParanoidiP0ADE6.
OMAiAQYHDVV.
OrthoDBiEOG65J540.
PhylomeDBiP0ADE6.

Enzyme and pathway databases

BioCyciEcoCyc:G7395-MONOMER.
ECOL316407:JW2640-MONOMER.

Miscellaneous databases

PROiP0ADE6.

Family and domain databases

Gene3Di3.10.350.10. 1 hit.
InterProiIPR007055. BON_dom.
IPR018392. LysM_dom.
IPR014004. Transpt-assoc_nodulatn_dom_bac.
[Graphical view]
PfamiPF04972. BON. 1 hit.
PF01476. LysM. 1 hit.
[Graphical view]
SMARTiSM00749. BON. 1 hit.
SM00257. LysM. 1 hit.
[Graphical view]
SUPFAMiSSF54106. SSF54106. 1 hit.
PROSITEiPS50914. BON. 1 hit.
PS51782. LYSM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-13.
    Strain: K12 / EMG2.

Entry informationi

Entry nameiYGAU_ECOLI
AccessioniPrimary (citable) accession number: P0ADE6
Secondary accession number(s): P39169
, P76624, P77022, P77023
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: January 23, 2007
Last modified: July 6, 2016
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.