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Protein

Putative transcription factor YjjQ

Gene

yjjQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi171 – 19020H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • response to methylglyoxal Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7947-MONOMER.
ECOL316407:JW4329-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transcription factor YjjQ
Gene namesi
Name:yjjQ
Ordered Locus Names:b4365, JW4329
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12593. yjjQ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 241241Putative transcription factor YjjQPRO_0000169814Add
BLAST

Proteomic databases

PaxDbiP0ADD7.

Expressioni

Inductioni

Repressed by H-NS, activated by LeuO. Member of the yjjQ-bglJ operon.2 Publications

Interactioni

Subunit structurei

May form homodimers.

Protein-protein interaction databases

BioGridi4262776. 161 interactions.
STRINGi511145.b4365.

Structurei

3D structure databases

ProteinModelPortaliP0ADD7.
SMRiP0ADD7. Positions 152-196.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini147 – 21266HTH luxR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108N8T. Bacteria.
ENOG4110JED. LUCA.
HOGENOMiHOG000127585.
OMAiAKGWGIN.
OrthoDBiEOG69GZGV.
PhylomeDBiP0ADD7.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ADD7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPGCCKNGI VISKIPVMQA GLKEVMRTHF PEYEIISSAS AEDLTLLQLR
60 70 80 90 100
RSGLVIADLA GESEDPRSVC EHYYSLISQY REIHWVFMVS RSWYSQAVEL
110 120 130 140 150
LMCPTATLLS DVEPIENLVK TVRSGNTHAE RISAMLTSPA MTETHDFSYR
160 170 180 190 200
SVILTLSERK VLRLLGKGWG INQIASLLKK SNKTISAQKN SAMRRLAIHS
210 220 230 240
NAEMYAWINS AQGARELNLP SVYGDAAEWN TAELRREMSH S
Length:241
Mass (Da):27,032
Last modified:December 6, 2005 - v1
Checksum:i83DF457B46AE230F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97264.1.
U00096 Genomic DNA. Translation: AAC77321.1.
AP009048 Genomic DNA. Translation: BAE78355.1.
PIRiS56592.
RefSeqiNP_418785.1. NC_000913.3.
WP_000936635.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77321; AAC77321; b4365.
BAE78355; BAE78355; BAE78355.
GeneIDi948896.
KEGGiecj:JW4329.
eco:b4365.
PATRICi32124338. VBIEscCol129921_4512.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97264.1.
U00096 Genomic DNA. Translation: AAC77321.1.
AP009048 Genomic DNA. Translation: BAE78355.1.
PIRiS56592.
RefSeqiNP_418785.1. NC_000913.3.
WP_000936635.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ADD7.
SMRiP0ADD7. Positions 152-196.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262776. 161 interactions.
STRINGi511145.b4365.

Proteomic databases

PaxDbiP0ADD7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77321; AAC77321; b4365.
BAE78355; BAE78355; BAE78355.
GeneIDi948896.
KEGGiecj:JW4329.
eco:b4365.
PATRICi32124338. VBIEscCol129921_4512.

Organism-specific databases

EchoBASEiEB2478.
EcoGeneiEG12593. yjjQ.

Phylogenomic databases

eggNOGiENOG4108N8T. Bacteria.
ENOG4110JED. LUCA.
HOGENOMiHOG000127585.
OMAiAKGWGIN.
OrthoDBiEOG69GZGV.
PhylomeDBiP0ADD7.

Enzyme and pathway databases

BioCyciEcoCyc:G7947-MONOMER.
ECOL316407:JW4329-MONOMER.

Miscellaneous databases

PROiP0ADD7.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR016032. Sig_transdc_resp-reg_C-effctor.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
[Graphical view]
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
PROSITEiPS50043. HTH_LUXR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Regulation of the yjjQ-bglJ operon, encoding LuxR-type transcription factors, and the divergent yjjP gene by H-NS and LeuO."
    Stratmann T., Madhusudan S., Schnetz K.
    J. Bacteriol. 190:926-935(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: OPERON STRUCTURE, INDUCTION.
    Strain: CSH50.
  5. "Involvement of the leucine response transcription factor LeuO in regulation of the genes for sulfa drug efflux."
    Shimada T., Yamamoto K., Ishihama A.
    J. Bacteriol. 191:4562-4571(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: OPERON STRUCTURE, INDUCTION.
    Strain: K12 / BW25113.
  6. "BglJ-RcsB heterodimers relieve repression of the Escherichia coli bgl operon by H-NS."
    Venkatesh G.R., Kembou Koungni F.C., Paukner A., Stratmann T., Blissenbach B., Schnetz K.
    J. Bacteriol. 192:6456-6464(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: POSSIBLE SUBUNIT.

Entry informationi

Entry nameiYJJQ_ECOLI
AccessioniPrimary (citable) accession number: P0ADD7
Secondary accession number(s): P39403, Q2M5V1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2005
Last sequence update: December 6, 2005
Last modified: April 13, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.