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Protein

Inner membrane protein YohC

Gene

yohC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki

Enzyme and pathway databases

BioCyciEcoCyc:EG12016-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YohC
Gene namesi
Name:yohC
Ordered Locus Names:b2135, JW5356
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12016. yohC.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 32CytoplasmicSequence analysisAdd BLAST32
Transmembranei33 – 55HelicalSequence analysisAdd BLAST23
Topological domaini56 – 64PeriplasmicSequence analysis9
Transmembranei65 – 87HelicalSequence analysisAdd BLAST23
Topological domaini88 – 107CytoplasmicSequence analysisAdd BLAST20
Transmembranei108 – 130HelicalSequence analysisAdd BLAST23
Topological domaini131 – 134PeriplasmicSequence analysis4
Transmembranei135 – 157HelicalSequence analysisAdd BLAST23
Topological domaini158 – 169CytoplasmicSequence analysisAdd BLAST12
Transmembranei170 – 192HelicalSequence analysisAdd BLAST23
Topological domaini193 – 195PeriplasmicSequence analysis3

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001691381 – 195Inner membrane protein YohCAdd BLAST195

Proteomic databases

PaxDbiP0AD17.
PRIDEiP0AD17.

Interactioni

Protein-protein interaction databases

BioGridi4261820. 8 interactors.
IntActiP0AD17. 2 interactors.
STRINGi316385.ECDH10B_2291.

Structurei

3D structure databases

ProteinModelPortaliP0AD17.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41069YE. Bacteria.
ENOG4111H2T. LUCA.
HOGENOMiHOG000293849.
InParanoidiP0AD17.
PhylomeDBiP0AD17.

Family and domain databases

InterProiView protein in InterPro
IPR009698. DUF1282.
PfamiView protein in Pfam
PF06930. DUF1282. 1 hit.

Sequencei

Sequence statusi: Complete.

P0AD17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHVWGLFSH PDREMQVINR ENETISHHYT HHVLLMAAIP VICAFIGTTQ
60 70 80 90 100
IGWNFGDGTI LKLSWFTGLA LAVLFYGVML AGVAVMGRVI WWMARNYPQR
110 120 130 140 150
PSLAHCMVFA GYVATPLFLS GLVALYPLVW LCALVGTVAL FYTGYLLYLG
160 170 180 190
IPSFLNINKE EGLSFSSSTL AIGVLVLEVL LALTVILWGY GYRLF
Length:195
Mass (Da):21,691
Last modified:November 22, 2005 - v1
Checksum:i87B3B5437D6D56E8
GO

Sequence cautioni

The sequence AAA60497 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60497.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75196.2.
AP009048 Genomic DNA. Translation: BAE76612.1.
RefSeqiNP_416639.2. NC_000913.3.
WP_001295454.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75196; AAC75196; b2135.
BAE76612; BAE76612; BAE76612.
GeneIDi946666.
KEGGiecj:JW5356.
eco:b2135.
PATRICifig|1411691.4.peg.107.

Similar proteinsi

Entry informationi

Entry nameiYOHC_ECOLI
AccessioniPrimary (citable) accession number: P0AD17
Secondary accession number(s): P33365, Q2MAU4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: July 5, 2017
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene