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Protein

Uncharacterized protein YecF

Gene

yecF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12861-MONOMER.
ECOL316407:JW1900-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YecF
Gene namesi
Name:yecF
Ordered Locus Names:b1915, JW1900
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12861. yecF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7474Uncharacterized protein YecFPRO_0000169073Add
BLAST

Proteomic databases

PaxDbiP0AD07.
PRIDEiP0AD07.

Interactioni

Protein-protein interaction databases

BioGridi4260372. 11 interactions.
IntActiP0AD07. 15 interactions.
STRINGi511145.b1915.

Structurei

3D structure databases

ProteinModelPortaliP0AD07.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105XVG. Bacteria.
ENOG41122AK. LUCA.
HOGENOMiHOG000219285.
OMAiAHEVSCL.
OrthoDBiEOG6358G8.

Family and domain databases

InterProiIPR019705. DUF2594.
[Graphical view]
PfamiPF10769. DUF2594. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0AD07-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTPDFSTAE NNQELANEVS CLKAMLTLML QAMGQADAGR VMLKMEKQLA
60 70
LIEDETQAAV FSKTVKQIKQ AYRQ
Length:74
Mass (Da):8,239
Last modified:November 22, 2005 - v1
Checksum:i4D20DA9A0B4DD888
GO

Sequence cautioni

The sequence X03691 differs from that shown. Reason: Frameshift at position 38. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03691 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74982.1.
AP009048 Genomic DNA. Translation: BAA15735.1.
PIRiH64954.
RefSeqiNP_416425.1. NC_000913.3.
WP_000106474.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74982; AAC74982; b1915.
BAA15735; BAA15735; BAA15735.
GeneIDi946420.
KEGGiecj:JW1900.
eco:b1915.
PATRICi32119165. VBIEscCol129921_1997.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X03691 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74982.1.
AP009048 Genomic DNA. Translation: BAA15735.1.
PIRiH64954.
RefSeqiNP_416425.1. NC_000913.3.
WP_000106474.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0AD07.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260372. 11 interactions.
IntActiP0AD07. 15 interactions.
STRINGi511145.b1915.

Proteomic databases

PaxDbiP0AD07.
PRIDEiP0AD07.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74982; AAC74982; b1915.
BAA15735; BAA15735; BAA15735.
GeneIDi946420.
KEGGiecj:JW1900.
eco:b1915.
PATRICi32119165. VBIEscCol129921_1997.

Organism-specific databases

EchoBASEiEB2703.
EcoGeneiEG12861. yecF.

Phylogenomic databases

eggNOGiENOG4105XVG. Bacteria.
ENOG41122AK. LUCA.
HOGENOMiHOG000219285.
OMAiAHEVSCL.
OrthoDBiEOG6358G8.

Enzyme and pathway databases

BioCyciEcoCyc:EG12861-MONOMER.
ECOL316407:JW1900-MONOMER.

Miscellaneous databases

PROiP0AD07.

Family and domain databases

InterProiIPR019705. DUF2594.
[Graphical view]
PfamiPF10769. DUF2594. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Multiple control elements for the uvrC gene unit of Escherichia coli."
    Sharma S., Stark T.F., Beattie W.G., Moses R.E.
    Nucleic Acids Res. 14:2301-2318(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Detection of new genes in a bacterial genome using Markov models for three gene classes."
    Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.
    Nucleic Acids Res. 23:3554-3562(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYECF_ECOLI
AccessioniPrimary (citable) accession number: P0AD07
Secondary accession number(s): O07984, P46120, P76312
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: January 20, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.