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Protein

Uncharacterized protein YdiE

Gene

ydiE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12391-MONOMER.
ECOL316407:JW1695-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdiE
Gene namesi
Name:ydiE
Ordered Locus Names:b1705, JW1695
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12391. ydiE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689881 – 63Uncharacterized protein YdiEAdd BLAST63

Proteomic databases

PaxDbiP0ACX9.
PRIDEiP0ACX9.

Interactioni

Protein-protein interaction databases

BioGridi4260297. 16 interactors.
IntActiP0ACX9. 17 interactors.
STRINGi511145.b1705.

Structurei

Secondary structure

163
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi27 – 29Combined sources3
Helixi30 – 34Combined sources5
Turni35 – 38Combined sources4
Beta strandi39 – 44Combined sources6
Beta strandi47 – 53Combined sources7
Beta strandi59 – 62Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4YNXX-ray1.50A/B1-63[»]
ProteinModelPortaliP0ACX9.
SMRiP0ACX9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Y.enterocolitica HemP.Curated

Phylogenomic databases

eggNOGiCOG4256. LUCA.
HOGENOMiHOG000262430.
OMAiKFTPETD.

Family and domain databases

InterProiIPR019600. Hemin_uptake_protein_HemP.
[Graphical view]
PfamiPF10636. hemP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACX9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYTDSRKLT PETDANHKTA SPQPIRRISS QTLLGPDGKL IIDHDGQEYL
60
LRKTQAGKLL LTK
Length:63
Mass (Da):7,117
Last modified:November 22, 2005 - v1
Checksum:iA1EA3DD6F1DC69A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M38266 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74775.1.
AP009048 Genomic DNA. Translation: BAA15474.1.
PIRiA64929.
RefSeqiNP_416220.1. NC_000913.3.
WP_001270809.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74775; AAC74775; b1705.
BAA15474; BAA15474; BAA15474.
GeneIDi946205.
KEGGiecj:JW1695.
eco:b1705.
PATRICi32118716. VBIEscCol129921_1776.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M38266 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74775.1.
AP009048 Genomic DNA. Translation: BAA15474.1.
PIRiA64929.
RefSeqiNP_416220.1. NC_000913.3.
WP_001270809.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4YNXX-ray1.50A/B1-63[»]
ProteinModelPortaliP0ACX9.
SMRiP0ACX9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260297. 16 interactors.
IntActiP0ACX9. 17 interactors.
STRINGi511145.b1705.

Proteomic databases

PaxDbiP0ACX9.
PRIDEiP0ACX9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74775; AAC74775; b1705.
BAA15474; BAA15474; BAA15474.
GeneIDi946205.
KEGGiecj:JW1695.
eco:b1705.
PATRICi32118716. VBIEscCol129921_1776.

Organism-specific databases

EchoBASEiEB2292.
EcoGeneiEG12391. ydiE.

Phylogenomic databases

eggNOGiCOG4256. LUCA.
HOGENOMiHOG000262430.
OMAiKFTPETD.

Enzyme and pathway databases

BioCyciEcoCyc:EG12391-MONOMER.
ECOL316407:JW1695-MONOMER.

Miscellaneous databases

PROiP0ACX9.

Family and domain databases

InterProiIPR019600. Hemin_uptake_protein_HemP.
[Graphical view]
PfamiPF10636. hemP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDIE_ECOLI
AccessioniPrimary (citable) accession number: P0ACX9
Secondary accession number(s): P40721
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.