Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YdiE

Gene

ydiE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG12391-MONOMER.
ECOL316407:JW1695-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdiE
Gene namesi
Name:ydiE
Ordered Locus Names:b1705, JW1695
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12391. ydiE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6363Uncharacterized protein YdiEPRO_0000168988Add
BLAST

Proteomic databases

PaxDbiP0ACX9.

Interactioni

Protein-protein interaction databases

BioGridi4260297. 16 interactions.
IntActiP0ACX9. 17 interactions.
STRINGi511145.b1705.

Structurei

Secondary structure

1
63
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi27 – 293Combined sources
Helixi30 – 345Combined sources
Turni35 – 384Combined sources
Beta strandi39 – 446Combined sources
Beta strandi47 – 537Combined sources
Beta strandi59 – 624Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4YNXX-ray1.50A/B1-63[»]
ProteinModelPortaliP0ACX9.
SMRiP0ACX9. Positions 22-63.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Y.enterocolitica HemP.Curated

Phylogenomic databases

eggNOGiCOG4256. LUCA.
HOGENOMiHOG000262430.
OMAiKFTPETD.
OrthoDBiEOG69979D.

Family and domain databases

InterProiIPR019600. Hemin_uptake_protein_HemP.
[Graphical view]
PfamiPF10636. hemP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACX9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYTDSRKLT PETDANHKTA SPQPIRRISS QTLLGPDGKL IIDHDGQEYL
60
LRKTQAGKLL LTK
Length:63
Mass (Da):7,117
Last modified:November 22, 2005 - v1
Checksum:iA1EA3DD6F1DC69A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M38266 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74775.1.
AP009048 Genomic DNA. Translation: BAA15474.1.
PIRiA64929.
RefSeqiNP_416220.1. NC_000913.3.
WP_001270809.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74775; AAC74775; b1705.
BAA15474; BAA15474; BAA15474.
GeneIDi946205.
KEGGiecj:JW1695.
eco:b1705.
PATRICi32118716. VBIEscCol129921_1776.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M38266 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74775.1.
AP009048 Genomic DNA. Translation: BAA15474.1.
PIRiA64929.
RefSeqiNP_416220.1. NC_000913.3.
WP_001270809.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4YNXX-ray1.50A/B1-63[»]
ProteinModelPortaliP0ACX9.
SMRiP0ACX9. Positions 22-63.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260297. 16 interactions.
IntActiP0ACX9. 17 interactions.
STRINGi511145.b1705.

Proteomic databases

PaxDbiP0ACX9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74775; AAC74775; b1705.
BAA15474; BAA15474; BAA15474.
GeneIDi946205.
KEGGiecj:JW1695.
eco:b1705.
PATRICi32118716. VBIEscCol129921_1776.

Organism-specific databases

EchoBASEiEB2292.
EcoGeneiEG12391. ydiE.

Phylogenomic databases

eggNOGiCOG4256. LUCA.
HOGENOMiHOG000262430.
OMAiKFTPETD.
OrthoDBiEOG69979D.

Enzyme and pathway databases

BioCyciEcoCyc:EG12391-MONOMER.
ECOL316407:JW1695-MONOMER.

Miscellaneous databases

PROiP0ACX9.

Family and domain databases

InterProiIPR019600. Hemin_uptake_protein_HemP.
[Graphical view]
PfamiPF10636. hemP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Two promoters control the aroH gene of Escherichia coli."
    Hudson G.S., Rellos P., Davidson B.E.
    Gene 102:87-91(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Intrinsic and extrinsic approaches for detecting genes in a bacterial genome."
    Borodovsky M., Rudd K.E., Koonin E.V.
    Nucleic Acids Res. 22:4756-4767(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiYDIE_ECOLI
AccessioniPrimary (citable) accession number: P0ACX9
Secondary accession number(s): P40721
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: January 20, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.