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Protein

Putative monooxygenase YdhR

Gene

ydhR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

May function as monoxygenase and play a role in the metabolism of aromatic compounds.Curated

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:G6895-MONOMER.
ECOL316407:JW1657-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative monooxygenase YdhR (EC:1.-.-.-)
Gene namesi
Name:ydhR
Ordered Locus Names:b1667, JW1657
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13952. ydhR.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 101101Putative monooxygenase YdhRPRO_0000013854Add
BLAST

Proteomic databases

EPDiP0ACX3.
PaxDbiP0ACX3.
PRIDEiP0ACX3.

Interactioni

Subunit structurei

Homodimer.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
dnaKP0A6Y82EBI-544817,EBI-542092

Protein-protein interaction databases

BioGridi4263223. 14 interactions.
DIPiDIP-48270N.
IntActiP0ACX3. 2 interactions.
STRINGi511145.b1667.

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 108Combined sources
Helixi16 – 227Combined sources
Helixi24 – 307Combined sources
Beta strandi36 – 449Combined sources
Turni45 – 484Combined sources
Beta strandi49 – 5810Combined sources
Helixi59 – 7315Combined sources
Helixi74 – 763Combined sources
Beta strandi77 – 793Combined sources
Beta strandi82 – 887Combined sources
Helixi90 – 956Combined sources
Turni96 – 1005Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WD6X-ray2.90A/B1-101[»]
2ASYNMR-A/B1-101[»]
2HIQX-ray2.00A/B2-101[»]
ProteinModelPortaliP0ACX3.
SMRiP0ACX3. Positions 2-98.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP0ACX3.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105N0V. Bacteria.
ENOG4111VBS. LUCA.
HOGENOMiHOG000270810.
InParanoidiP0ACX3.
OMAiLWKIWTE.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR014910. YdhR.
[Graphical view]
PfamiPF08803. ydhR. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.

Sequencei

Sequence statusi: Complete.

P0ACX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLLQLHFA FNGPFGDAMA EQLKPLAESI NQEPGFLWKV WTESEKNHEA
60 70 80 90 100
GGIYLFTDEK SALAYLEKHT ARLKNLGVEE VVAKVFDVNE PLSQINQAKL

A
Length:101
Mass (Da):11,288
Last modified:November 22, 2005 - v1
Checksum:iA8D41BD1D99B21C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47943.1.
U00096 Genomic DNA. Translation: AAC74737.1.
AP009048 Genomic DNA. Translation: BAE76495.1.
PIRiC64924.
RefSeqiNP_416182.1. NC_000913.3.
WP_000212657.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74737; AAC74737; b1667.
BAE76495; BAE76495; BAE76495.
GeneIDi946177.
KEGGiecj:JW1657.
eco:b1667.
PATRICi32118640. VBIEscCol129921_1738.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47943.1.
U00096 Genomic DNA. Translation: AAC74737.1.
AP009048 Genomic DNA. Translation: BAE76495.1.
PIRiC64924.
RefSeqiNP_416182.1. NC_000913.3.
WP_000212657.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WD6X-ray2.90A/B1-101[»]
2ASYNMR-A/B1-101[»]
2HIQX-ray2.00A/B2-101[»]
ProteinModelPortaliP0ACX3.
SMRiP0ACX3. Positions 2-98.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263223. 14 interactions.
DIPiDIP-48270N.
IntActiP0ACX3. 2 interactions.
STRINGi511145.b1667.

Proteomic databases

EPDiP0ACX3.
PaxDbiP0ACX3.
PRIDEiP0ACX3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74737; AAC74737; b1667.
BAE76495; BAE76495; BAE76495.
GeneIDi946177.
KEGGiecj:JW1657.
eco:b1667.
PATRICi32118640. VBIEscCol129921_1738.

Organism-specific databases

EchoBASEiEB3710.
EcoGeneiEG13952. ydhR.

Phylogenomic databases

eggNOGiENOG4105N0V. Bacteria.
ENOG4111VBS. LUCA.
HOGENOMiHOG000270810.
InParanoidiP0ACX3.
OMAiLWKIWTE.

Enzyme and pathway databases

BioCyciEcoCyc:G6895-MONOMER.
ECOL316407:JW1657-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP0ACX3.
PROiP0ACX3.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR014910. YdhR.
[Graphical view]
PfamiPF08803. ydhR. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDHR_ECOLI
AccessioniPrimary (citable) accession number: P0ACX3
Secondary accession number(s): P77225, Q2MB61
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: September 7, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.