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Protein

Inner membrane protein YdgC

Gene

ydgC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6863-MONOMER.
ECOL316407:JW1599-MONOMER.

Protein family/group databases

TCDBi9.B.72.1.2. the 4 tms glpm (glpm) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdgC
Gene namesi
Name:ydgC
Ordered Locus Names:b1607, JW1599
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13191. ydgC.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 26CytoplasmicSequence analysisAdd BLAST26
Transmembranei27 – 47HelicalSequence analysisAdd BLAST21
Topological domaini48 – 58PeriplasmicSequence analysisAdd BLAST11
Transmembranei59 – 79HelicalSequence analysisAdd BLAST21
Topological domaini80 – 87CytoplasmicSequence analysis8
Transmembranei88 – 108HelicalSequence analysisAdd BLAST21
Topological domaini109 – 111PeriplasmicSequence analysis3

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689691 – 111Inner membrane protein YdgCAdd BLAST111

Proteomic databases

PaxDbiP0ACX0.
PRIDEiP0ACX0.

Interactioni

Protein-protein interaction databases

BioGridi4260253. 4 interactors.
IntActiP0ACX0. 1 interactor.
STRINGi511145.b1607.

Structurei

3D structure databases

ProteinModelPortaliP0ACX0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To P.aeruginosa GlpM.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105RA2. Bacteria.
COG3136. LUCA.
HOGENOMiHOG000120863.
InParanoidiP0ACX0.
OMAiYFVYLAT.

Family and domain databases

InterProiIPR009707. GlpM/YdgC.
[Graphical view]
PfamiPF06942. GlpM. 1 hit.
[Graphical view]
ProDomiPD028709. GlpM. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P0ACX0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLVIKAALG ALVVLLIGVL AKTKNYYIAG LIPLFPTFAL IAHYIVASER
60 70 80 90 100
GIEALRATII FSMWSIIPYF VYLVSLWYFT GMMRLPAAFV GSVACWGISA
110
WVLIICWIKL H
Length:111
Mass (Da):12,323
Last modified:November 22, 2005 - v1
Checksum:i8690061D033E5873
GO

Sequence cautioni

The sequence U41101 differs from that shown. Reason: Frameshift at positions 11 and 38.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U41101 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74679.1.
AP009048 Genomic DNA. Translation: BAA15345.1.
PIRiA64917.
RefSeqiNP_416124.1. NC_000913.3.
WP_000524868.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74679; AAC74679; b1607.
BAA15345; BAA15345; BAA15345.
GeneIDi945156.
KEGGiecj:JW1599.
eco:b1607.
PATRICi32118516. VBIEscCol129921_1678.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U41101 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC74679.1.
AP009048 Genomic DNA. Translation: BAA15345.1.
PIRiA64917.
RefSeqiNP_416124.1. NC_000913.3.
WP_000524868.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACX0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260253. 4 interactors.
IntActiP0ACX0. 1 interactor.
STRINGi511145.b1607.

Protein family/group databases

TCDBi9.B.72.1.2. the 4 tms glpm (glpm) family.

Proteomic databases

PaxDbiP0ACX0.
PRIDEiP0ACX0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74679; AAC74679; b1607.
BAA15345; BAA15345; BAA15345.
GeneIDi945156.
KEGGiecj:JW1599.
eco:b1607.
PATRICi32118516. VBIEscCol129921_1678.

Organism-specific databases

EchoBASEiEB2983.
EcoGeneiEG13191. ydgC.

Phylogenomic databases

eggNOGiENOG4105RA2. Bacteria.
COG3136. LUCA.
HOGENOMiHOG000120863.
InParanoidiP0ACX0.
OMAiYFVYLAT.

Enzyme and pathway databases

BioCyciEcoCyc:G6863-MONOMER.
ECOL316407:JW1599-MONOMER.

Miscellaneous databases

PROiP0ACX0.

Family and domain databases

InterProiIPR009707. GlpM/YdgC.
[Graphical view]
PfamiPF06942. GlpM. 1 hit.
[Graphical view]
ProDomiPD028709. GlpM. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYDGC_ECOLI
AccessioniPrimary (citable) accession number: P0ACX0
Secondary accession number(s): P52110, P77466
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.