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Protein

HTH-type transcriptional regulator YjdC

Gene

yjdC

Organism
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YjdC
Gene namesi
Name:yjdC
Ordered Locus Names:c5217
OrganismiEscherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Taxonomic identifieri199310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000001410 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000706451 – 191HTH-type transcriptional regulator YjdCAdd BLAST191

Interactioni

Protein-protein interaction databases

STRINGi199310.c5217

Structurei

3D structure databases

ProteinModelPortaliP0ACU8
SMRiP0ACU8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH tetR-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4108SIC Bacteria
COG1309 LUCA
HOGENOMiHOG000127273
OMAiCDLANAA

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001647 HTH_TetR
IPR036271 Tet_transcr_reg_TetR-rel_C_sf
SUPFAMiSSF46689 SSF46689, 1 hit
SSF48498 SSF48498, 1 hit
PROSITEiView protein in PROSITE
PS50977 HTH_TETR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P0ACU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQREDVLGEA LKLLELQGIA NTTLEMVAER VDYPLDELRR FWPDKEAILY
60 70 80 90 100
DALRYLSQQI DVWRRQLMLD ETQTAEQKLL ARYQALSECV KNNRYPGCLF
110 120 130 140 150
IAACTFYPDP GHPIHQLADQ QKSAAYDFTH ELLTTLEVDD PAMVAKQMEL
160 170 180 190
VLEGCLSRML VNRSQADVDT AHRLAEDILR FARCRQGGAL T
Length:191
Mass (Da):21,931
Last modified:November 22, 2005 - v1
Checksum:i298D47E05A1BA41F
GO

Sequence cautioni

The sequence AAN83639 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014075 Genomic DNA Translation: AAN83639.1 Different initiation.
RefSeqiWP_001188520.1, NC_004431.1

Genome annotation databases

EnsemblBacteriaiAAN83639; AAN83639; c5217
KEGGiecc:c5217

Similar proteinsi

Entry informationi

Entry nameiYJDC_ECOL6
AccessioniPrimary (citable) accession number: P0ACU8
Secondary accession number(s): P36656, Q47128
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 28, 2018
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

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