Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

HTH-type transcriptional regulator YjdC

Gene

yjdC

Organism
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YjdC
Gene namesi
Name:yjdC
Ordered Locus Names:c5217
OrganismiEscherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Taxonomic identifieri199310 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000001410 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000706451 – 191HTH-type transcriptional regulator YjdCAdd BLAST191

Interactioni

Protein-protein interaction databases

STRINGi199310.c5217.

Structurei

3D structure databases

ProteinModelPortaliP0ACU8.
SMRiP0ACU8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH tetR-typePROSITE-ProRule annotationAdd BLAST60

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108SIC. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000127273.
OMAiCSFYPQP.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQREDVLGEA LKLLELQGIA NTTLEMVAER VDYPLDELRR FWPDKEAILY
60 70 80 90 100
DALRYLSQQI DVWRRQLMLD ETQTAEQKLL ARYQALSECV KNNRYPGCLF
110 120 130 140 150
IAACTFYPDP GHPIHQLADQ QKSAAYDFTH ELLTTLEVDD PAMVAKQMEL
160 170 180 190
VLEGCLSRML VNRSQADVDT AHRLAEDILR FARCRQGGAL T
Length:191
Mass (Da):21,931
Last modified:November 22, 2005 - v1
Checksum:i298D47E05A1BA41F
GO

Sequence cautioni

The sequence AAN83639 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014075 Genomic DNA. Translation: AAN83639.1. Different initiation.
RefSeqiWP_001188520.1. NC_004431.1.

Genome annotation databases

EnsemblBacteriaiAAN83639; AAN83639; c5217.
KEGGiecc:c5217.
PATRICi18288094. VBIEscCol75197_4892.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014075 Genomic DNA. Translation: AAN83639.1. Different initiation.
RefSeqiWP_001188520.1. NC_004431.1.

3D structure databases

ProteinModelPortaliP0ACU8.
SMRiP0ACU8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi199310.c5217.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN83639; AAN83639; c5217.
KEGGiecc:c5217.
PATRICi18288094. VBIEscCol75197_4892.

Phylogenomic databases

eggNOGiENOG4108SIC. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000127273.
OMAiCSFYPQP.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJDC_ECOL6
AccessioniPrimary (citable) accession number: P0ACU8
Secondary accession number(s): P36656, Q47128
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.