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Protein

HTH-type transcriptional regulator YjdC

Gene

yjdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12176-MONOMER.
ECOL316407:JW5733-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YjdC
Gene namesi
Name:yjdC
Synonyms:cutA3
Ordered Locus Names:b4135, JW5733
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12176. yjdC.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000706441 – 191HTH-type transcriptional regulator YjdCAdd BLAST191

Proteomic databases

EPDiP0ACU7.
PaxDbiP0ACU7.
PRIDEiP0ACU7.

2D gel databases

SWISS-2DPAGEP0ACU7.

Interactioni

Protein-protein interaction databases

BioGridi4262690. 5 interactors.
DIPiDIP-48209N.
STRINGi511145.b4135.

Structurei

3D structure databases

ProteinModelPortaliP0ACU7.
SMRiP0ACU7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH tetR-typePROSITE-ProRule annotationAdd BLAST60

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108SIC. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000127273.
InParanoidiP0ACU7.
OMAiCSFYPQP.
PhylomeDBiP0ACU7.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACU7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQREDVLGEA LKLLELQGIA NTTLEMVAER VDYPLDELRR FWPDKEAILY
60 70 80 90 100
DALRYLSQQI DVWRRQLMLD ETQTAEQKLL ARYQALSECV KNNRYPGCLF
110 120 130 140 150
IAACTFYPDP GHPIHQLADQ QKSAAYDFTH ELLTTLEVDD PAMVAKQMEL
160 170 180 190
VLEGCLSRML VNRSQADVDT AHRLAEDILR FARCRQGGAL T
Length:191
Mass (Da):21,931
Last modified:November 22, 2005 - v1
Checksum:i298D47E05A1BA41F
GO

Sequence cautioni

The sequence AAA97034 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence CAA85376 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z36905 Genomic DNA. Translation: CAA85376.1. Different initiation.
X77707 Genomic DNA. Translation: CAA54782.1.
U14003 Genomic DNA. Translation: AAA97034.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77095.2.
AP009048 Genomic DNA. Translation: BAE78137.1.
M67452 Genomic DNA. No translation available.
RefSeqiNP_418558.2. NC_000913.3.
WP_001188520.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77095; AAC77095; b4135.
BAE78137; BAE78137; BAE78137.
GeneIDi948650.
KEGGiecj:JW5733.
eco:b4135.
PATRICi32123837. VBIEscCol129921_4266.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z36905 Genomic DNA. Translation: CAA85376.1. Different initiation.
X77707 Genomic DNA. Translation: CAA54782.1.
U14003 Genomic DNA. Translation: AAA97034.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77095.2.
AP009048 Genomic DNA. Translation: BAE78137.1.
M67452 Genomic DNA. No translation available.
RefSeqiNP_418558.2. NC_000913.3.
WP_001188520.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACU7.
SMRiP0ACU7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262690. 5 interactors.
DIPiDIP-48209N.
STRINGi511145.b4135.

2D gel databases

SWISS-2DPAGEP0ACU7.

Proteomic databases

EPDiP0ACU7.
PaxDbiP0ACU7.
PRIDEiP0ACU7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77095; AAC77095; b4135.
BAE78137; BAE78137; BAE78137.
GeneIDi948650.
KEGGiecj:JW5733.
eco:b4135.
PATRICi32123837. VBIEscCol129921_4266.

Organism-specific databases

EchoBASEiEB2093.
EcoGeneiEG12176. yjdC.

Phylogenomic databases

eggNOGiENOG4108SIC. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000127273.
InParanoidiP0ACU7.
OMAiCSFYPQP.
PhylomeDBiP0ACU7.

Enzyme and pathway databases

BioCyciEcoCyc:EG12176-MONOMER.
ECOL316407:JW5733-MONOMER.

Miscellaneous databases

PROiP0ACU7.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYJDC_ECOLI
AccessioniPrimary (citable) accession number: P0ACU7
Secondary accession number(s): P36656, Q2M6G9, Q47128
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.