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Protein

Uncharacterized HTH-type transcriptional regulator YbiH

Gene

ybiH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi33 – 52H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12406-MONOMER.
ECOL316407:JW0780-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbiH
Gene namesi
Name:ybiH
Ordered Locus Names:b0796, JW0780
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12406. ybiH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000706321 – 223Uncharacterized HTH-type transcriptional regulator YbiHAdd BLAST223

Proteomic databases

PaxDbiP0ACU0.
PRIDEiP0ACU0.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
itself2EBI-1114129,EBI-1114129

Protein-protein interaction databases

BioGridi4259961. 7 interactors.
IntActiP0ACU0. 10 interactors.
STRINGi511145.b0796.

Structurei

3D structure databases

ProteinModelPortaliP0ACU0.
SMRiP0ACU0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 70HTH tetR-typePROSITE-ProRule annotationAdd BLAST60

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4107MVR. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000118101.
InParanoidiP0ACU0.
OMAiSPTDAYP.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR023772. DNA-bd_HTH_TetR-type_CS.
IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
IPR015292. Tscrpt_reg_YbiH_C.
[Graphical view]
PfamiPF09209. DUF1956. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS01081. HTH_TETR_1. 1 hit.
PS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACU0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNNPAMTIKG EQAKKQLIAA ALAQFGEYGM NATTREIAAQ AGQNIAAITY
60 70 80 90 100
YFGSKEDLYL ACAQWIADFI GEQFRPHAEE AERLFAQPQP DRAAIRELIL
110 120 130 140 150
RACRNMIKLL TQDDTVNLSK FISREQLSPT AAYHLVHEQV ISPLHSHLTR
160 170 180 190 200
LIAAWTGCDA NDTRMILHTH ALIGEILAFR LGKETILLRT GWTAFDEEKT
210 220
ELINQTVTCH IDLILQGLSQ RSL
Length:223
Mass (Da):25,017
Last modified:November 22, 2005 - v1
Checksum:iB85EBC247EE8DA86
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73883.2.
AP009048 Genomic DNA. Translation: BAA35456.1.
RefSeqiNP_415317.4. NC_000913.3.
WP_001296991.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73883; AAC73883; b0796.
BAA35456; BAA35456; BAA35456.
GeneIDi945421.
KEGGiecj:JW0780.
eco:b0796.
PATRICi32116793. VBIEscCol129921_0822.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAC73883.2.
AP009048 Genomic DNA. Translation: BAA35456.1.
RefSeqiNP_415317.4. NC_000913.3.
WP_001296991.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACU0.
SMRiP0ACU0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259961. 7 interactors.
IntActiP0ACU0. 10 interactors.
STRINGi511145.b0796.

Proteomic databases

PaxDbiP0ACU0.
PRIDEiP0ACU0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73883; AAC73883; b0796.
BAA35456; BAA35456; BAA35456.
GeneIDi945421.
KEGGiecj:JW0780.
eco:b0796.
PATRICi32116793. VBIEscCol129921_0822.

Organism-specific databases

EchoBASEiEB2306.
EcoGeneiEG12406. ybiH.

Phylogenomic databases

eggNOGiENOG4107MVR. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000118101.
InParanoidiP0ACU0.
OMAiSPTDAYP.

Enzyme and pathway databases

BioCyciEcoCyc:EG12406-MONOMER.
ECOL316407:JW0780-MONOMER.

Miscellaneous databases

PROiP0ACU0.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR023772. DNA-bd_HTH_TetR-type_CS.
IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
IPR015292. Tscrpt_reg_YbiH_C.
[Graphical view]
PfamiPF09209. DUF1956. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS01081. HTH_TETR_1. 1 hit.
PS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBIH_ECOLI
AccessioniPrimary (citable) accession number: P0ACU0
Secondary accession number(s): P41037, P78054
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.