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Reviewed, UniProtKB/Swiss-Prot P0ACS7 (RPIR_ECOLI)

Last modified June 16, 2009. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    HTH-type transcriptional regulator rpiR
Alternative name(s):
    Als operon repressor
Gene names
Name: rpiR
Synonyms: alsR, yjcY
Ordered Locus Names: b4089, JW4050
OrganismEscherichia coli (strain K12) [Complete proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length296 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Regulatory protein involved in rpiB gene repression. Also involved in als operon repression. Ref.5

Sequence similarities

Contains 1 HTH rpiR-type DNA-binding domain.

Contains 1 SIS domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 296296HTH-type transcriptional regulator rpiR
PRO_0000068620

Regions

Domain14 – 9077HTH rpiR-type
Domain135 – 296162SIS
DNA binding50 – 6920H-T-H motif Potential

Sequences

Sequence LengthMass (Da)Tools
P0ACS7-1 [UniParc].

Last modified November 22, 2005. Version 1.
Checksum: 7946848F0798E200

FASTA29632,362
        10         20         30         40         50         60 
MSQSEFDSAL PNGIGLAPYL RMKQEGMTEN ESRIVEWLLK PGNLSCAPAI KDVAEALAVS 

        70         80         90        100        110        120 
EAMIVKVSKL LGFSGFRNLR SALEDYFSQS EQVLPSELAF DEAPQDVVNK VFNITLRTIM 

       130        140        150        160        170        180 
EGQSIVNVDE IHRAARFFYQ ARQRDLYGAG GSNAICADVQ HKFLRIGVRC QAYPDAHIMM 

       190        200        210        220        230        240 
MSASLLQEGD VVLVVTHSGR TSDVKAAVEL AKKNGAKIIC ITHSYHSPIA KLADYIICSP 

       250        260        270        280        290 
APETPLLGRN ASARILQLTL LDAFFVSVAQ LNIEQANINM QKTGAIVDFF SPGALK 

« Hide

References

« Hide 'large scale' references
[1]"Ribose catabolism of Escherichia coli: characterization of the rpiB gene encoding ribose phosphate isomerase B and of the rpiR gene, which is involved in regulation of rpiB expression."
Soerensen K.I., Hove-Jensen B.
J. Bacteriol. 178:1003-1011(1996) [PubMed: 8576032] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[2]"Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
Nucleic Acids Res. 23:2105-2119(1995) [PubMed: 7610040] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[4]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[5]"The D-allose operon of Escherichia coli K-12."
Kim C., Song S., Park C.
J. Bacteriol. 179:7631-7637(1997) [PubMed: 9401019] [Abstract]
Cited for: FUNCTION IN ALS REPRESSION.

Cross-references

Sequence databases

X82203 Genomic DNA. Translation: CAA57687.1.
U14003 Genomic DNA. Translation: AAA96988.1. Different initiation.
U00096 Genomic DNA. Translation: AAC77050.1. Different initiation.
AP009048 Genomic DNA. Translation: BAE78092.1.
PIRS56317.
RefSeqAP_004591.1.
NP_418513.4.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID948603.
GenomeReviewsGene locus JW4050 in contig AP009048_GR.
Gene locus b4089 in contig U00096_GR.
KEGGecj:JW4050.
eco:b4089.

Organism-specific databases

EchoBASEEB2353.
EcoGeneEG12459. rpiR.
CMRSearch...

Phylogenomic databases

HOGENOMP0ACS7.
OMAP0ACS7. DSSERVY.

Enzyme and pathway databases

BioCycEcoCyc:G7821-MON.

Family and domain databases

InterProIPR000281. HTH_RpiR.
IPR001347. SIS.
[Graphical view]
PfamPF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
[Graphical view]
PROSITEPS51071. HTH_RPIR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRPIR_ECOLI
AccessionPrimary (citable) accession number: P0ACS7
Secondary accession number(s): P39266, P76791, Q2M6L4
Entry history
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: June 16, 2009
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents