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Protein

Uncharacterized HTH-type transcriptional regulator YeiE

Gene

yeiE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi20 – 3920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG12105-MONOMER.
ECOL316407:JW2144-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YeiE
Gene namesi
Name:yeiE
Ordered Locus Names:b2157, JW2144
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12105. yeiE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 293293Uncharacterized HTH-type transcriptional regulator YeiEPRO_0000105788Add
BLAST

Proteomic databases

EPDiP0ACR4.
PaxDbiP0ACR4.
PRIDEiP0ACR4.

Interactioni

Protein-protein interaction databases

BioGridi4261800. 11 interactions.
DIPiDIP-11918N.
STRINGi511145.b2157.

Structurei

3D structure databases

ProteinModelPortaliP0ACR4.
SMRiP0ACR4. Positions 3-286.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6060HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiP0ACR4.
OMAiCKAIDER.
OrthoDBiEOG67MF25.
PhylomeDBiP0ACR4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACR4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHITLRQLEV FAEVLKSGST TQASVMLALS QSAVSAALTD LEGQLGVQLF
60 70 80 90 100
DRVGKRLVVN EHGRLLYPRA LALLEQAVEI EQLFREDNGA IRIYASSTIG
110 120 130 140 150
NYILPAVIAR YRHDYPQLPI ELSVGNSQDV MQAVLDFRVD IGFIEGPCHS
160 170 180 190 200
TEIISEPWLE DELVVFAAPT SPLARGPVTL EQLAAAPWIL RERGSGTREI
210 220 230 240 250
VDYLLLSHLP KFEMAMELGN SEAIKHAVRH GLGISCLSRR VIEDQLQAGT
260 270 280 290
LSEVAVPLPR LMRTLWRIHH RQKHLSNALR RFLDYCDPAN VPR
Length:293
Mass (Da):32,724
Last modified:November 22, 2005 - v1
Checksum:i3AD5B7411C5A27D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60508.1.
M89774 Genomic DNA. Translation: AAA17052.1.
U00096 Genomic DNA. Translation: AAC75218.1.
AP009048 Genomic DNA. Translation: BAE76634.1.
PIRiD64984.
RefSeqiNP_416662.1. NC_000913.3.
WP_000548294.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75218; AAC75218; b2157.
BAE76634; BAE76634; BAE76634.
GeneIDi946657.
KEGGiecj:JW2144.
eco:b2157.
PATRICi32119663. VBIEscCol129921_2242.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00007 Genomic DNA. Translation: AAA60508.1.
M89774 Genomic DNA. Translation: AAA17052.1.
U00096 Genomic DNA. Translation: AAC75218.1.
AP009048 Genomic DNA. Translation: BAE76634.1.
PIRiD64984.
RefSeqiNP_416662.1. NC_000913.3.
WP_000548294.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACR4.
SMRiP0ACR4. Positions 3-286.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261800. 11 interactions.
DIPiDIP-11918N.
STRINGi511145.b2157.

Proteomic databases

EPDiP0ACR4.
PaxDbiP0ACR4.
PRIDEiP0ACR4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75218; AAC75218; b2157.
BAE76634; BAE76634; BAE76634.
GeneIDi946657.
KEGGiecj:JW2144.
eco:b2157.
PATRICi32119663. VBIEscCol129921_2242.

Organism-specific databases

EchoBASEiEB2029.
EcoGeneiEG12105. yeiE.

Phylogenomic databases

eggNOGiENOG4105DUM. Bacteria.
COG0583. LUCA.
HOGENOMiHOG000233518.
InParanoidiP0ACR4.
OMAiCKAIDER.
OrthoDBiEOG67MF25.
PhylomeDBiP0ACR4.

Enzyme and pathway databases

BioCyciEcoCyc:EG12105-MONOMER.
ECOL316407:JW2144-MONOMER.

Miscellaneous databases

PROiP0ACR4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Automated multiplex sequencing of the E.coli genome."
    Richterich P., Lakey N., Gryan G., Jaehn L., Mintz L., Robison K., Church G.M.
    Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / BHB2600.
  2. "A gene encoding a member of the LysR family of regulatory proteins precedes the lysP gene of Escherichia coli."
    Shi W.P., Rosen B.P.
    Submitted (APR-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "The lysP gene encodes the lysine-specific permease."
    Steffes C., Ellis J., Wu J., Rosen B.P.
    J. Bacteriol. 174:3242-3249(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: PRELIMINARY NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 189-293.
    Strain: BPR2.

Entry informationi

Entry nameiYEIE_ECOLI
AccessioniPrimary (citable) accession number: P0ACR4
Secondary accession number(s): P32484, Q2MAS2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 16, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.