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Protein

Uncharacterized HTH-type transcriptional regulator YdhB

Gene

ydhB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi19 – 38H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG12140-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdhB
Gene namesi
Name:ydhB
Ordered Locus Names:b1659, JW1651
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12140 ydhB

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057841 – 310Uncharacterized HTH-type transcriptional regulator YdhBAdd BLAST310

Proteomic databases

PaxDbiP0ACR2
PRIDEiP0ACR2

Interactioni

Protein-protein interaction databases

BioGridi4262908, 22 interactors
IntActiP0ACR2, 5 interactors
STRINGi316385.ECDH10B_1793

Structurei

3D structure databases

ProteinModelPortaliP0ACR2
SMRiP0ACR2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 59HTH lysR-typePROSITE-ProRule annotationAdd BLAST59

Phylogenomic databases

eggNOGiENOG4105F52 Bacteria
ENOG410XT26 LUCA
HOGENOMiHOG000181313
InParanoidiP0ACR2
OMAiPKRTTWL
PhylomeDBiP0ACR2

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P0ACR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWSEYSLEVV DAVARNGSFS AAAQELHRVP SAVSYTVRQL EEWLAVPLFE
60 70 80 90 100
RRHRDVELTA AGAWFLKEGR SVVKKMQITR QQCQQIANGW RGQLAIAVDN
110 120 130 140 150
IVRPERTRQM IVDFYRHFDD VELLVFQEVF NGVWDALSDG RVELAIGATR
160 170 180 190 200
AIPVGGRYAF RDMGMLSWSC VVASHHPLAL MDGPFSDDTL RNWPSLVRED
210 220 230 240 250
TSRTLPKRIT WLLDNQKRVV VPDWESSATC ISAGLCIGMV PTHFAKPWLN
260 270 280 290 300
EGKWVALELE NPFPDSACCL TWQQNDMSPA LTWLLEYLGD SETLNKEWLR
310
EPEETPATGD
Length:310
Mass (Da):35,250
Last modified:November 22, 2005 - v1
Checksum:iBBC7A2F2B2AC351A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti253K → E (PubMed:9097039).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X69109 Genomic DNA No translation available.
U00096 Genomic DNA Translation: AAC74731.1
AP009048 Genomic DNA Translation: BAA15425.2
X51368 Genomic DNA No translation available.
PIRiE64923
RefSeqiNP_416176.1, NC_000913.3
WP_000269501.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74731; AAC74731; b1659
BAA15425; BAA15425; BAA15425
GeneIDi945208
KEGGiecj:JW1651
eco:b1659
PATRICifig|1411691.4.peg.598

Similar proteinsi

Entry informationi

Entry nameiYDHB_ECOLI
AccessioniPrimary (citable) accession number: P0ACR2
Secondary accession number(s): P37598, P77677
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 28, 2018
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health