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Protein

Uncharacterized HTH-type transcriptional regulator YtfH

Gene

ytfH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7869-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YtfH
Gene namesi
Name:ytfH
Ordered Locus Names:b4212, JW5747
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12508 ytfH

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001488811 – 126Uncharacterized HTH-type transcriptional regulator YtfHAdd BLAST126

Proteomic databases

PaxDbiP0ACN2
PRIDEiP0ACN2

Interactioni

Protein-protein interaction databases

BioGridi4263389, 9 interactors
DIPiDIP-12936N
STRINGi316385.ECDH10B_4407

Structurei

3D structure databases

ProteinModelPortaliP0ACN2
SMRiP0ACN2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 118HTH hxlR-typePROSITE-ProRule annotationAdd BLAST99

Phylogenomic databases

eggNOGiENOG4105KVH Bacteria
COG1733 LUCA
HOGENOMiHOG000293549
InParanoidiP0ACN2
OMAiRKSYNTV
PhylomeDBiP0ACN2

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR002577 HTH_HxlR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01638 HxlR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51118 HTH_HXLR, 1 hit

Sequencei

Sequence statusi: Complete.

P0ACN2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQVSLSQQL KEGNLFAEQC PSREVLKHVT SRWGVLILVA LREGTHRFSD
60 70 80 90 100
LRRKIGGVSE KMLAQSLQAL EQDGFLNRIA YPVVPPHVEY SLTPLGEQVS
110 120
EKVAALADWI ELNLPEVLAV RDERAA
Length:126
Mass (Da):14,075
Last modified:November 22, 2005 - v1
Checksum:i43448B2D88593FDB
GO

Sequence cautioni

The sequence AAA97108 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA Translation: AAA97108.1 Different initiation.
U00096 Genomic DNA Translation: AAC77169.2
AP009048 Genomic DNA Translation: BAE78213.1
PIRiS56437
RefSeqiNP_418633.4, NC_000913.3
WP_000084622.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC77169; AAC77169; b4212
BAE78213; BAE78213; BAE78213
GeneIDi948730
KEGGiecj:JW5747
eco:b4212
PATRICifig|1411691.4.peg.2489

Entry informationi

Entry nameiYTFH_ECOLI
AccessioniPrimary (citable) accession number: P0ACN2
Secondary accession number(s): P39316, Q2M693
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: March 28, 2018
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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