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Protein

Uncharacterized HTH-type transcriptional regulator YihL

Gene

yihL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi33 – 5220H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG11838-MONOMER.
ECOL316407:JW3843-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YihL
Gene namesi
Name:yihL
Ordered Locus Names:b3872, JW3843
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11838. yihL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 236236Uncharacterized HTH-type transcriptional regulator YihLPRO_0000050683Add
BLAST

Proteomic databases

PaxDbiP0ACM9.
PRIDEiP0ACM9.

Interactioni

Protein-protein interaction databases

BioGridi4262632. 9 interactions.
IntActiP0ACM9. 9 interactions.
STRINGi511145.b3872.

Structurei

3D structure databases

ProteinModelPortaliP0ACM9.
SMRiP0ACM9. Positions 13-215.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 7369HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108K85. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000009654.
InParanoidiP0ACM9.
OMAiFYHETFI.
PhylomeDBiP0ACM9.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACM9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENQSTVEN AKEKLDRWLK DGITTPGGKL PSERELGELL GIKRMTLRQA
60 70 80 90 100
LLNLEAESKI FRKDRKGWFV TQPRFNYSPE LSASFQRAAI EQGREPSWGF
110 120 130 140 150
TEKNRTSDIP ETLAPLIAVT PSTELYRITG WGALEGHKVF YHETYINPEV
160 170 180 190 200
APGFIEQLEN HSFSAVWEKC YQKETVVKKL IFKPVRMPGD ISKYLGGSAG
210 220 230
MPAILIEKHR ADQQGNIVQI DIEYWRFEAV DLIINL
Length:236
Mass (Da):26,939
Last modified:November 22, 2005 - v1
Checksum:i729349BD0C70F778
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03006.1.
U00096 Genomic DNA. Translation: AAC76869.1.
AP009048 Genomic DNA. Translation: BAE77437.1.
PIRiS40817.
RefSeqiNP_418308.1. NC_000913.3.
WP_000829798.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76869; AAC76869; b3872.
BAE77437; BAE77437; BAE77437.
GeneIDi948368.
KEGGiecj:JW3843.
eco:b3872.
PATRICi32123247. VBIEscCol129921_3984.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03006.1.
U00096 Genomic DNA. Translation: AAC76869.1.
AP009048 Genomic DNA. Translation: BAE77437.1.
PIRiS40817.
RefSeqiNP_418308.1. NC_000913.3.
WP_000829798.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACM9.
SMRiP0ACM9. Positions 13-215.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262632. 9 interactions.
IntActiP0ACM9. 9 interactions.
STRINGi511145.b3872.

Proteomic databases

PaxDbiP0ACM9.
PRIDEiP0ACM9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76869; AAC76869; b3872.
BAE77437; BAE77437; BAE77437.
GeneIDi948368.
KEGGiecj:JW3843.
eco:b3872.
PATRICi32123247. VBIEscCol129921_3984.

Organism-specific databases

EchoBASEiEB1784.
EcoGeneiEG11838. yihL.

Phylogenomic databases

eggNOGiENOG4108K85. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000009654.
InParanoidiP0ACM9.
OMAiFYHETFI.
PhylomeDBiP0ACM9.

Enzyme and pathway databases

BioCyciEcoCyc:EG11838-MONOMER.
ECOL316407:JW3843-MONOMER.

Miscellaneous databases

PROiP0ACM9.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIHL_ECOLI
AccessioniPrimary (citable) accession number: P0ACM9
Secondary accession number(s): P32133, Q2M8G9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: September 7, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.