Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YbaO

Gene

ybaO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi21 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • response to amino acid Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6247-MONOMER.
ECOL316407:JW0437-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbaO
Gene namesi
Name:ybaO
Ordered Locus Names:b0447, JW0437
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13218. ybaO.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001117471 – 152Uncharacterized HTH-type transcriptional regulator YbaOAdd BLAST152

Proteomic databases

PaxDbiP0ACJ5.
PRIDEiP0ACJ5.

Interactioni

Protein-protein interaction databases

BioGridi4260653. 14 interactors.
DIPiDIP-11303N.
IntActiP0ACJ5. 3 interactors.
STRINGi511145.b0447.

Structurei

3D structure databases

ProteinModelPortaliP0ACJ5.
SMRiP0ACJ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 63HTH asnC-typePROSITE-ProRule annotationAdd BLAST62

Sequence similaritiesi

Contains 1 HTH asnC-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108XM1. Bacteria.
COG1522. LUCA.
HOGENOMiHOG000115328.
InParanoidiP0ACJ5.
KOiK05800.
OMAiSTTPCWK.
PhylomeDBiP0ACJ5.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProiIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01037. AsnC_trans_reg. 1 hit.
PF13404. HTH_AsnC-type. 1 hit.
[Graphical view]
PRINTSiPR00033. HTHASNC.
SMARTiSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiPS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLDKIDRKLL ALLQQDCTLS LQALAEAVNL TTTPCWKRLK RLEDDGILIG
60 70 80 90 100
KVALLDPEKI GLGLTAFVLI KTQHHSSEWY CRFVTVVTEM PEVLGFWRMA
110 120 130 140 150
GEYDYLMRVQ VADMKRYDEF YKRLVNSVPG LSDVTSSFAM EQIKYTTSLP

IE
Length:152
Mass (Da):17,437
Last modified:November 22, 2005 - v1
Checksum:i8409CEDC4CA3D012
GO

Sequence cautioni

The sequence AAB40203 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D82943 Genomic DNA. Translation: BAA11651.1.
U82664 Genomic DNA. Translation: AAB40203.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73550.2.
Z54355 Genomic DNA. No translation available.
L08627 Unassigned DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76227.1.
RefSeqiNP_414981.4. NC_000913.3.
WP_000884589.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73550; AAC73550; b0447.
BAE76227; BAE76227; BAE76227.
GeneIDi945091.
KEGGiecj:JW0437.
eco:b0447.
PATRICi32116047. VBIEscCol129921_0465.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D82943 Genomic DNA. Translation: BAA11651.1.
U82664 Genomic DNA. Translation: AAB40203.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73550.2.
Z54355 Genomic DNA. No translation available.
L08627 Unassigned DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76227.1.
RefSeqiNP_414981.4. NC_000913.3.
WP_000884589.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP0ACJ5.
SMRiP0ACJ5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260653. 14 interactors.
DIPiDIP-11303N.
IntActiP0ACJ5. 3 interactors.
STRINGi511145.b0447.

Proteomic databases

PaxDbiP0ACJ5.
PRIDEiP0ACJ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73550; AAC73550; b0447.
BAE76227; BAE76227; BAE76227.
GeneIDi945091.
KEGGiecj:JW0437.
eco:b0447.
PATRICi32116047. VBIEscCol129921_0465.

Organism-specific databases

EchoBASEiEB3009.
EcoGeneiEG13218. ybaO.

Phylogenomic databases

eggNOGiENOG4108XM1. Bacteria.
COG1522. LUCA.
HOGENOMiHOG000115328.
InParanoidiP0ACJ5.
KOiK05800.
OMAiSTTPCWK.
PhylomeDBiP0ACJ5.

Enzyme and pathway databases

BioCyciEcoCyc:G6247-MONOMER.
ECOL316407:JW0437-MONOMER.

Miscellaneous databases

PROiP0ACJ5.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProiIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01037. AsnC_trans_reg. 1 hit.
PF13404. HTH_AsnC-type. 1 hit.
[Graphical view]
PRINTSiPR00033. HTHASNC.
SMARTiSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiPS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBAO_ECOLI
AccessioniPrimary (citable) accession number: P0ACJ5
Secondary accession number(s): P54986
, P71209, P77575, Q2MBX9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 22, 2005
Last modified: November 2, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.