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Protein

Uncharacterized GST-like protein YibF

Gene

yibF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Glutathione (GSH) transferase homolog, that might be involved in selenium metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei9Glutathione1 Publication1
Binding sitei49Glutathione; via amide nitrogen and carbonyl oxygen1 Publication1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11762-MONOMER.
ECOL316407:JW3565-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized GST-like protein YibF
Gene namesi
Name:yibF
Ordered Locus Names:b3592, JW3565
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11762. yibF.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001858741 – 202Uncharacterized GST-like protein YibFAdd BLAST202

Proteomic databases

EPDiP0ACA1.
PaxDbiP0ACA1.
PRIDEiP0ACA1.

Interactioni

Protein-protein interaction databases

BioGridi4261877. 11 interactors.
IntActiP0ACA1. 2 interactors.
STRINGi511145.b3592.

Structurei

Secondary structure

1202
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Helixi10 – 21Combined sources12
Beta strandi27 – 30Combined sources4
Beta strandi35 – 37Combined sources3
Turni41 – 43Combined sources3
Beta strandi51 – 53Combined sources3
Helixi63 – 72Combined sources10
Helixi84 – 112Combined sources29
Helixi115 – 117Combined sources3
Helixi120 – 142Combined sources23
Helixi153 – 168Combined sources16
Turni172 – 177Combined sources6
Helixi179 – 189Combined sources11
Helixi192 – 195Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3R2QX-ray1.05A1-202[»]
ProteinModelPortaliP0ACA1.
SMRiP0ACA1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 78GST N-terminalAdd BLAST78
Domaini83 – 202GST C-terminalAdd BLAST120

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni62 – 63Glutathione binding2

Sequence similaritiesi

Belongs to the GST superfamily. HSP26 family.Curated
Contains 1 GST C-terminal domain.Curated
Contains 1 GST N-terminal domain.Curated

Phylogenomic databases

eggNOGiENOG4108U78. Bacteria.
COG0625. LUCA.
HOGENOMiHOG000125756.
InParanoidiP0ACA1.
OMAiARWRRMT.
PhylomeDBiP0ACA1.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR004046. GST_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF00043. GST_C. 1 hit.
PF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P0ACA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLVGSYTSP FVRKLSILLL EKGITFEFIN ELPYNADNGV AQFNPLGKVP
60 70 80 90 100
VLVTEEGECW FDSPIIAEYI ELMNVAPAML PRDPLESLRV RKIEALADGI
110 120 130 140 150
MDAGLVSVRE QARPAAQQSE DELLRQREKI NRSLDVLEGY LVDGTLKTDT
160 170 180 190 200
VNLATIAIAC AVGYLNFRRV APGWCVDRPH LVKLVENLFS RESFARTEPP

KA
Length:202
Mass (Da):22,545
Last modified:November 8, 2005 - v1
Checksum:iBFEA058143049D67
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti195A → T (PubMed:8387990).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95064.1.
U16247 Genomic DNA. Translation: AAA56754.1.
U00039 Genomic DNA. Translation: AAB18569.1.
U00096 Genomic DNA. Translation: AAC76616.1.
AP009048 Genomic DNA. Translation: BAE77701.1.
PIRiS47813.
RefSeqiNP_418049.1. NC_000913.3.
WP_000779792.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76616; AAC76616; b3592.
BAE77701; BAE77701; BAE77701.
GeneIDi948113.
KEGGiecj:JW3565.
eco:b3592.
PATRICi32122662. VBIEscCol129921_3708.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19044 Genomic DNA. Translation: AAC95064.1.
U16247 Genomic DNA. Translation: AAA56754.1.
U00039 Genomic DNA. Translation: AAB18569.1.
U00096 Genomic DNA. Translation: AAC76616.1.
AP009048 Genomic DNA. Translation: BAE77701.1.
PIRiS47813.
RefSeqiNP_418049.1. NC_000913.3.
WP_000779792.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3R2QX-ray1.05A1-202[»]
ProteinModelPortaliP0ACA1.
SMRiP0ACA1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261877. 11 interactors.
IntActiP0ACA1. 2 interactors.
STRINGi511145.b3592.

Proteomic databases

EPDiP0ACA1.
PaxDbiP0ACA1.
PRIDEiP0ACA1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76616; AAC76616; b3592.
BAE77701; BAE77701; BAE77701.
GeneIDi948113.
KEGGiecj:JW3565.
eco:b3592.
PATRICi32122662. VBIEscCol129921_3708.

Organism-specific databases

EchoBASEiEB1712.
EcoGeneiEG11762. yibF.

Phylogenomic databases

eggNOGiENOG4108U78. Bacteria.
COG0625. LUCA.
HOGENOMiHOG000125756.
InParanoidiP0ACA1.
OMAiARWRRMT.
PhylomeDBiP0ACA1.

Enzyme and pathway databases

BioCyciEcoCyc:EG11762-MONOMER.
ECOL316407:JW3565-MONOMER.

Miscellaneous databases

PROiP0ACA1.

Family and domain databases

Gene3Di1.20.1050.10. 1 hit.
3.40.30.10. 1 hit.
InterProiIPR010987. Glutathione-S-Trfase_C-like.
IPR004045. Glutathione_S-Trfase_N.
IPR004046. GST_C.
IPR012336. Thioredoxin-like_fold.
[Graphical view]
PfamiPF00043. GST_C. 1 hit.
PF13417. GST_N_3. 1 hit.
[Graphical view]
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF52833. SSF52833. 1 hit.
PROSITEiPS50405. GST_CTER. 1 hit.
PS50404. GST_NTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIBF_ECOLI
AccessioniPrimary (citable) accession number: P0ACA1
Secondary accession number(s): P32105, Q2M7Q5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2005
Last sequence update: November 8, 2005
Last modified: November 2, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.